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0
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1
reply
887
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Reactome physical association pairs in the human protein-protein interactions data
reactome network ppi
updated 4.0 years ago by 27k • written 4.0 years ago by ▴ 100
3
votes
1
reply
4.1k
views
RNA-Seq data distribution
RNA-Seq distribution
updated 5.3 years ago by 20 • written 8.6 years ago by ▴ 100
1
vote
2
replies
1.1k
views
Diseased tissue gene expression source
gene disease expression
updated 5.8 years ago by ★ 5.2k • written 5.8 years ago by ▴ 100
6
votes
6
replies
9.0k
views
Using ComBat on RNASeq FPKM counts
RNA-Seq ComBat
updated 6.7 years ago by 89k • written 8.5 years ago by ▴ 100
0
votes
0
replies
929
views
Genes that affect cancer prognosis in general
cancer survival gene
7.1 years ago by ebrudermanver ▴ 100
0
votes
0
replies
9.4k
views
Comment: C: Difference between DNA microarray and RNA microarray
7.4 years ago by ebrudermanver ▴ 100
7
votes
7
replies
9.4k
views
Difference between DNA microarray and RNA microarray
sequencing gene
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 100
0
votes
1
reply
9.4k
views
Comment: C: Difference between DNA microarray and RNA microarray
7.4 years ago by ebrudermanver ▴ 100
0
votes
1
reply
3.3k
views
Comment: C: Calculating FPKM values from HT-counts
7.5 years ago by ebrudermanver ▴ 100
0
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1
reply
2.8k
views
Comment: C: What does it mean to model expression data by a probability distribution?
7.6 years ago by ebrudermanver ▴ 100
5
votes
3
replies
2.8k
views
What does it mean to model expression data by a probability distribution?
RNA-Seq distribution microarray
updated 7.6 years ago by 27k • written 7.6 years ago by ▴ 100
6
votes
3
replies
3.8k
views
What is the reason why we usually use normalized values from RNA-Seq (FPKM, RPKM, etc.) ?
RNA-Seq
updated 7.7 years ago by 55k • written 7.7 years ago by ▴ 100
0
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0
replies
3.8k
views
Answer: A: What is the reason why we usually use normalized values from RNA-Seq (FPKM, RPKM
7.7 years ago by ebrudermanver ▴ 100
4
votes
2
replies
3.3k
views
What is the point of standardizing each gene in gene expression data?
standardization gene-expression
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 100
4
votes
2
replies
2.2k
views
Why some of the gene peptides returned by biomaRt do not have an asterisk in the end?
peptide biomart
updated 7.7 years ago by 24k • written 7.7 years ago by ▴ 100
1
vote
4
replies
2.8k
views
Is it fair to compare the significance of overlap of 2 different sized gene sets with a third gene set using Fisher's exact test?
statistics
updated 7.7 years ago by 11k • written 7.7 years ago by ▴ 100
2
votes
1
reply
1.4k
views
Do Ensembl gene IDs always correspond to human genes?
ensembl
updated 8.4 years ago by ★ 2.1k • written 8.4 years ago by ▴ 100
0
votes
2
replies
2.9k
views
Using PLINK to check SNP variation for a gene
SNP
updated 8.5 years ago by 20 • written 8.6 years ago by ▴ 100
0
votes
1
reply
9.0k
views
Comment: C: Using ComBat on RNASeq FPKM counts
8.5 years ago by ebrudermanver ▴ 100
0
votes
1
reply
9.0k
views
Comment: C: RNA-seq vs. Microarray
8.6 years ago by ebrudermanver ▴ 100
0
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0
replies
3.7k
views
Comment: C: PLINK linear association
8.6 years ago by ebrudermanver ▴ 100
2
votes
2
replies
3.7k
views
PLINK linear association
SNP multiple-regression
updated 8.6 years ago by 11k • written 8.6 years ago by ▴ 100
0
votes
0
replies
1.7k
views
Comment: C: PLINK error: "Could not place marker for left window edge"
8.6 years ago by ebrudermanver ▴ 100
0
votes
2
replies
1.7k
views
PLINK error: "Could not place marker for left window edge"
SNP
8.6 years ago by ebrudermanver ▴ 100
1
vote
0
replies
1.7k
views
Is it okay to scale the RNA-Seq counts after log-transformation?
RNA-Seq
8.7 years ago by ebrudermanver ▴ 100
0
votes
1
reply
1.9k
views
Comment: C: Genes that exist in old Affymetrix platform but not in the newer one
9.0 years ago by ebrudermanver ▴ 100
3
votes
4
replies
1.9k
views
Genes that exist in old Affymetrix platform but not in the newer one
sequencing Affymetrix
updated 9.0 years ago by ★ 2.1k • written 9.0 years ago by ▴ 100
2
votes
1
reply
1.7k
views
REACTOME pathways origin
REACTOME pathway
updated 9.2 years ago by 27k • written 9.2 years ago by ▴ 100
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