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126
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 19 months ago by 44k • written 8.7 years ago by ★ 3.2k
1
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1
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6.8k
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Comment: C: stringtie cannot recognize Gencode GTF
6.9 years ago by Sinji ★ 3.2k
2
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0
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2.7k
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Comment: C: bedops -u does not work properly
6.9 years ago by Sinji ★ 3.2k
0
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1
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2.7k
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Comment: C: bedops -u does not work properly
6.9 years ago by Sinji ★ 3.2k
0
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1
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2.7k
views
Comment: C: bedops -u does not work properly
6.9 years ago by Sinji ★ 3.2k
0
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0
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1.6k
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Answer: A: Detect LINE1 element in NGS data
6.9 years ago by Sinji ★ 3.2k
0
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0
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1.8k
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Comment: C: How to extract variable nucleotide regions from a list of contigs
6.9 years ago by Sinji ★ 3.2k
1
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1
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2.4k
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Comment: C: nextflow implementation of grape pipeline
7.0 years ago by Sinji ★ 3.2k
1
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2
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4.8k
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Comment: C: How Gro-seq identify enhancer RNA?
7.0 years ago by Sinji ★ 3.2k
3
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6
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9.5k
views
Trim galore terminates with exit signal: '256'
trim_galore cutadapt
updated 7.0 years ago by ▴ 590 • written 8.5 years ago by ★ 3.2k
7
votes
6
replies
6.9k
views
ChromHMM Output Descriptions
ChromHMM
updated 7.0 years ago by ▴ 100 • written 8.3 years ago by ★ 3.2k
1
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1
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9.0k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
7.0 years ago by Sinji ★ 3.2k
0
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0
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6.3k
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Comment: C: Identifying the orientation of a CTCF motif?
7.1 years ago by Sinji ★ 3.2k
5
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7
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6.3k
views
Identifying the orientation of a CTCF motif?
CTCF ChIP-Seq
updated 7.1 years ago by ▴ 280 • written 7.1 years ago by ★ 3.2k
1
vote
0
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53k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.4 years ago by Sinji ★ 3.2k
7
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3
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46k
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Answer: A: Snakemake vs. Nextflow: strengths and weaknesses
7.4 years ago by Sinji ★ 3.2k
2
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0
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4.2k
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Comment: C: Chip-seq peak annotation [Chipseeker]
7.4 years ago by Sinji ★ 3.2k
1
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1
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5.1k
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Comment: C: STAR installation make error
7.5 years ago by Sinji ★ 3.2k
1
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0
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1.2k
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Answer: A: Peak ident near highly expressed genes
7.5 years ago by Sinji ★ 3.2k
0
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0
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4.6k
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Answer: A: chip-seq analysis and peak annotation
7.5 years ago by Sinji ★ 3.2k
3
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1
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6.5k
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Comment: C: Is annotation of enhancers to nearest gene pointless?
7.5 years ago by Sinji ★ 3.2k
6
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1
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6.5k
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Answer: A: Is annotation of enhancers to nearest gene pointless?
7.5 years ago by Sinji ★ 3.2k
0
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0
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3.5k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
7.5 years ago by Sinji ★ 3.2k
1
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0
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3.5k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
7.5 years ago by Sinji ★ 3.2k
1
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4
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3.5k
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BBMap: Number of reads out does not add up to number of reads in
bbmap
7.5 years ago by Sinji ★ 3.2k
1
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0
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5.7k
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Answer: A: Where can I download Human genome 38 as reference genome in RNA-seq?
7.5 years ago by Sinji ★ 3.2k
0
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0
replies
4.2k
views
Comment: C: error in macs2 usage
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
1.9k
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Comment: C: EP300 ChIP-seq in the brain
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
2.0k
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Comment: C: Long Motif Predicted by MEME SUITE
7.6 years ago by Sinji ★ 3.2k
1
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1
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2.0k
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Comment: C: Long Motif Predicted by MEME SUITE
7.6 years ago by Sinji ★ 3.2k
3
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7
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2.8k
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Does BBMap not include headers in BAM files?
bbmap
7.6 years ago by Sinji ★ 3.2k
1
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0
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2.8k
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Answer: A: Does BBMap not include headers in BAM files?
7.6 years ago by Sinji ★ 3.2k
0
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0
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2.8k
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Comment: C: Does BBMap not include headers in BAM files?
7.6 years ago by Sinji ★ 3.2k
0
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0
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2.8k
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Comment: C: Does BBMap not include headers in BAM files?
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
2.8k
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Comment: C: Does BBMap not include headers in BAM files?
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
3.0k
views
Comment: C: bedtools_intersect files sorting problem
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
3.0k
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Comment: C: bedtools_intersect files sorting problem
7.6 years ago by Sinji ★ 3.2k
1
vote
1
reply
4.1k
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Comment: C: convert2bed issue with large input file?
7.6 years ago by Sinji ★ 3.2k
0
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1
reply
3.3k
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Comment: C: Genomic overlap using ChIPseeker enrichPeakOverlap
7.6 years ago by Sinji ★ 3.2k
1
vote
1
reply
3.4k
views
Answer: A: compare peaks in a gene list (coordinates)
7.6 years ago by Sinji ★ 3.2k
1
vote
1
reply
2.1k
views
Comment: C: Pipeline for detecting (TF) Chip-seq peaks in transposable elements?
7.7 years ago by Sinji ★ 3.2k
0
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0
replies
3.4k
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Comment: C: how to filter ChIP-Seq peaks called by MACS based on the measurements?
7.7 years ago by Sinji ★ 3.2k
0
votes
0
replies
53k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.7 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.7k
views
Comment: C: STAR output processing
7.8 years ago by Sinji ★ 3.2k
2
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1
reply
2.0k
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Comment: C: How to split a bed file according promoter window (-30 to 300bp)
7.8 years ago by Sinji ★ 3.2k
1
vote
1
reply
2.0k
views
Comment: C: How to split a bed file according promoter window (-30 to 300bp)
7.8 years ago by Sinji ★ 3.2k
0
votes
0
replies
10k
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Comment: C: How to annotate TTS or TES
7.8 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.5k
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Comment: C: Homer findMotifsGenome.pl error
7.8 years ago by Sinji ★ 3.2k
1
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1
reply
10k
views
Comment: C: How to annotate TTS or TES
7.8 years ago by Sinji ★ 3.2k
0
votes
1
reply
10k
views
Comment: C: How to annotate TTS or TES
7.8 years ago by Sinji ★ 3.2k
197 results • Page 1 of 4
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