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different transcripts show hits to same gene but in different species, what is it showing?
blast alignment gene
updated 5.5 years ago by 20 • written 8.7 years ago by ★ 3.4k
6
votes
13
replies
15k
views
Showing FDR and log2FC in Volcano plot using R
R RNA-Seq volcano plot
updated 5.9 years ago by 12k • written 7.3 years ago by ★ 3.4k
17
votes
27
replies
6.3k
views
How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
RNA-Seq R DEG volcano plot
updated 5.9 years ago by 12k • written 6.9 years ago by ★ 3.4k
8
votes
6
replies
10k
views
How to just add some selected gene names to a volcano plot
R ggplot2 volcano plot
updated 5.9 years ago by 12k • written 6.9 years ago by ★ 3.4k
5
votes
7
replies
2.1k
views
step by step BlastX against nr using Amazon cloud
blast cloud annotation
updated 6.0 years ago by ▴ 20 • written 7.4 years ago by ★ 3.4k
0
votes
1
reply
3.6k
views
How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene Cytoscape network
updated 6.2 years ago by ▴ 580 • written 8.3 years ago by ★ 3.4k
24
votes
21
replies
9.0k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 22 months ago by 45k • written 6.5 years ago by ★ 3.4k
2
votes
8
replies
4.7k
views
What is the prefered script for HISAT2 genome-guided using draft genome? --dta or --exon ?
RNA-Seq alignment HISAT2 genome guided
6.7 years ago by Farbod ★ 3.4k
0
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0
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4.7k
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Comment: C: What is the prefered script for HISAT2 genome-guided using draft genome? --dta,
6.7 years ago by Farbod ★ 3.4k
0
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1
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4.7k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.8 years ago by Farbod ★ 3.4k
0
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1
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4.7k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.8 years ago by Farbod ★ 3.4k
0
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1
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4.7k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.8 years ago by Farbod ★ 3.4k
0
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0
replies
3.1k
views
Comment: C: Adding tag XS to HISAT2 sam files perior to StringTie
6.8 years ago by Farbod ★ 3.4k
0
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0
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3.0k
views
Comment: C: bam file merge
6.8 years ago by Farbod ★ 3.4k
2
votes
2
replies
3.1k
views
Adding tag XS to HISAT2 sam files perior to StringTie
RNA-Seq alignment hisat2 stringtie samtools
updated 6.8 years ago by 5.9k • written 6.8 years ago by ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
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1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.9k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.9k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.9k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
6.8 years ago by Farbod ★ 3.4k
7
votes
7
replies
4.9k
views
Mapping paired-end reads to a draft genome using HISAT2
RNA-Seq alignment HISAT2 genome guided
updated 6.8 years ago by 150k • written 6.8 years ago by ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.4k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
6.8 years ago by Farbod ★ 3.4k
8
votes
4
replies
2.2k
views
What is the recent preference for RNA-seq read deposition perior to publication
SRA RNA-Seq repository FAIRsharing
updated 6.8 years ago by 21k • written 6.8 years ago by ★ 3.4k
2
votes
0
replies
1.8k
views
Comment: C: 2-day WORKSHOP on SNAKEMAKE
6.8 years ago by Farbod ★ 3.4k
0
votes
1
reply
10k
views
Comment: C: How to just add some selected gene names to a volcano plot
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
10k
views
Comment: C: How to just add some selected gene names to a volcano plot
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
22k
views
Comment: C: Volcano plot help code
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
54k
views
Comment: C: Gene Set Clustering based on Functional annotation (GeneSCF)
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
6.3k
views
Comment: C: How to show both edgeR and deseq2 results in a volcano plot; highliting overlaps
6.9 years ago by Farbod ★ 3.4k
2
votes
0
replies
5.5k
views
Comment: C: how to map de novo assembly to reference genome ?
6.9 years ago by Farbod ★ 3.4k
4
votes
5
replies
3.7k
views
running BUSCO on all isoforms or longest isoform per gene?
assembly RNA-Seq
updated 6.9 years ago by ▴ 160 • written 6.9 years ago by ★ 3.4k
1
vote
1
reply
2.7k
views
How to perform univariate generalized linear models on RNA-seq data?
RNA-Seq DEG GLM SARTools
updated 6.9 years ago by 35k • written 6.9 years ago by ★ 3.4k
0
votes
1
reply
2.2k
views
Answer: A: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
6.9 years ago by Farbod ★ 3.4k
0
votes
4
replies
2.2k
views
SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
RNA-Seq edgeR DESeq2 SARTools
6.9 years ago by Farbod ★ 3.4k
0
votes
0
replies
2.2k
views
Comment: C: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
8.8k
views
Comment: C: too few differentially expressed genes using each of DESeq2, edgeR and Limma-voo
6.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.7k
views
Comment: C: running BUSCO on all isoforms or longest isoform per gene?
6.9 years ago by Farbod ★ 3.4k
1
vote
0
replies
2.5k
views
Comment: C: NGS data Analysis pipeline
6.9 years ago by Farbod ★ 3.4k
583 results • Page 1 of 12
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