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714
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Answer: Answer: LD SNP pruning with plink
4 months ago by Nicolas Rosewick 11k
1
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1
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730
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Answer: Answer: Calling variants/SNP for single-cell RNA-seq data
5 months ago by Nicolas Rosewick 11k
3
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8
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7.2k
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7 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 7 months ago by • 0 • written 5.7 years ago by 11k
0
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0
replies
290
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Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
9 months ago by Nicolas Rosewick 11k
2
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1
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652
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Comment: Comment: How do I add sample annotations to this data?
13 months ago by Nicolas Rosewick 11k
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0
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602
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Comment: Comment: DESEQ2 analysis result
13 months ago by Nicolas Rosewick 11k
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0
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585
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Comment: Comment: how to create a loop in R
14 months ago by Nicolas Rosewick 11k
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0
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2.0k
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Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
14 months ago by Nicolas Rosewick 11k
0
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1
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880
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Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
15 months ago by Nicolas Rosewick 11k
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2
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1.8k
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Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
16 months ago by Nicolas Rosewick 11k
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1
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1.1k
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Answer: Answer: FindAllMarkers in Seurat and statistical problem
17 months ago by Nicolas Rosewick 11k
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0
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2.5k
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Comment: Comment: Advantages of install.packages() versus BiocManager::install()
17 months ago by Nicolas Rosewick 11k
6
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0
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687
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Answer: Answer: How to plot combined bar graph in R
18 months ago by Nicolas Rosewick 11k
0
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1
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992
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Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
19 months ago by Nicolas Rosewick 11k
2
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0
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864
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Comment: Comment: Tophat: Genome indexing error
19 months ago by Nicolas Rosewick 11k
1
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0
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1.4k
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Answer: Answer: TCGAbiolinks
19 months ago by Nicolas Rosewick 11k
0
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0
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4.2k
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Comment: Comment: Identifying long stretches of Ns
19 months ago by Nicolas Rosewick 11k
17
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14
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31k
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13 follow
Merge Paired-End Reads
fastq
updated 20 months ago by 44k • written 13.1 years ago by 11k
0
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1
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823
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Comment: Comment: Plink-association test
20 months ago by Nicolas Rosewick 11k
2
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1
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1.0k
views
Comment: Comment: differential gene analysis
20 months ago by Nicolas Rosewick 11k
1
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1
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688
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Comment: Comment: Find genes which are related to SNPs
21 months ago by Nicolas Rosewick 11k
0
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1
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1.1k
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Comment: Comment: Bedtools multicov outfile file error
21 months ago by Nicolas Rosewick 11k
0
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0
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844
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Comment: Comment: RNAseq matrix containing zero values
21 months ago by Nicolas Rosewick 11k
0
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1
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829
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Answer: Answer: How to do differential expression without having replicates
21 months ago by Nicolas Rosewick 11k
0
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1
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875
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Answer: Answer: GIAB and GRCh38
21 months ago by Nicolas Rosewick 11k
1
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2
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2.2k
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Comment: Comment: Error in VQSR first step
21 months ago by Nicolas Rosewick 11k
1
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0
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1.5k
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Comment: Comment: make BED file from existing BIM and FAM files
22 months ago by Nicolas Rosewick 11k
1
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1
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815
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Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
22 months ago by Nicolas Rosewick 11k
2
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1
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839
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Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
22 months ago by Nicolas Rosewick 11k
2
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1
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1.8k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
22 months ago by Nicolas Rosewick 11k
0
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1
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1.8k
views
Comment: Comment: IGV coverage bar has color, but no mutation?
22 months ago by Nicolas Rosewick 11k
1
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1
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3.0k
views
Comment: Comment: How to increase the speed of miRanda target prediction program?
23 months ago by Nicolas Rosewick 11k
0
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0
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928
views
Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 23 months ago by 44k • written 23 months ago by 11k
2
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0
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1.5k
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Comment: Comment: parallel for 10000 whole exome data
23 months ago by Nicolas Rosewick 11k
0
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0
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1.6k
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Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
2.1 years ago by Nicolas Rosewick 11k
0
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1
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1.6k
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Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
2.1 years ago by Nicolas Rosewick 11k
4
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0
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657
views
Answer: Answer: pvalue vs adjust p-value
2.1 years ago by Nicolas Rosewick 11k
0
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1
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897
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
2.2 years ago by Nicolas Rosewick 11k
0
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1
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2.1k
views
Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
2.2 years ago by Nicolas Rosewick 11k
5
votes
4
replies
4.0k
views
hg19 interval list
gatk genome interval hg19
updated 2.5 years ago by 4.5k • written 5.6 years ago by 11k
0
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1
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651
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Comment: Comment: Mutations in contiguous sites within a sample
2.6 years ago by Nicolas Rosewick 11k
1
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1
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1.2k
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Comment: Comment: Query hg37 rsid information
2.6 years ago by Nicolas Rosewick 11k
0
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1
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1.4k
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Comment: Comment: sc/sn RNASeq
2.7 years ago by Nicolas Rosewick 11k
0
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1
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1.4k
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Comment: Comment: sc/sn RNASeq
2.7 years ago by Nicolas Rosewick 11k
0
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1
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1.1k
views
Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
2.8 years ago by Nicolas Rosewick 11k
0
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0
replies
822
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Comment: Comment: Reads mapping
2.8 years ago by Nicolas Rosewick 11k
1
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0
replies
565
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GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
2.8 years ago by Nicolas Rosewick 11k
2
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1
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2.0k
views
Comment: Comment: Inflated p-values in QQ-plot
2.8 years ago by Nicolas Rosewick 11k
0
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6
replies
2.5k
views
plink : Batch effect issues after merge of two datasets
plink merge
updated 2.9 years ago by • 0 • written 3.7 years ago by 11k
1
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0
replies
67k
views
Comment: Comment: Insert Size And Fragment Size ?
3.1 years ago by Nicolas Rosewick 11k
1,080 results • Page 1 of 22
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