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1.6k
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Answer: Answer: LD SNP pruning with plink
11 months ago by Nicolas Rosewick 11k
1
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1
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1.6k
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Answer: Answer: Calling variants/SNP for single-cell RNA-seq data
11 months ago by Nicolas Rosewick 11k
3
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8
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7.9k
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7 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 13 months ago by • 0 • written 6.2 years ago by 11k
0
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0
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548
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Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
15 months ago by Nicolas Rosewick 11k
2
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1
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1.0k
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Comment: Comment: How do I add sample annotations to this data?
20 months ago by Nicolas Rosewick 11k
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0
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862
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Comment: Comment: DESEQ2 analysis result
20 months ago by Nicolas Rosewick 11k
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0
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877
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Comment: Comment: how to create a loop in R
21 months ago by Nicolas Rosewick 11k
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0
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2.8k
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Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
21 months ago by Nicolas Rosewick 11k
0
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1
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1.3k
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Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
21 months ago by Nicolas Rosewick 11k
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2
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2.8k
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Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
23 months ago by Nicolas Rosewick 11k
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1
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1.7k
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Answer: Answer: FindAllMarkers in Seurat and statistical problem
23 months ago by Nicolas Rosewick 11k
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0
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3.5k
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Comment: Comment: Advantages of install.packages() versus BiocManager::install()
2.0 years ago by Nicolas Rosewick 11k
6
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0
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962
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Answer: Answer: How to plot combined bar graph in R
2.1 years ago by Nicolas Rosewick 11k
0
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1
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1.4k
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Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
2.1 years ago by Nicolas Rosewick 11k
2
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0
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1.3k
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Comment: Comment: Tophat: Genome indexing error
2.1 years ago by Nicolas Rosewick 11k
1
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0
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1.9k
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Answer: Answer: TCGAbiolinks
2.1 years ago by Nicolas Rosewick 11k
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0
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4.7k
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Comment: Comment: Identifying long stretches of Ns
2.2 years ago by Nicolas Rosewick 11k
17
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14
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32k
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13 follow
Merge Paired-End Reads
fastq
updated 2.2 years ago by 45k • written 13.7 years ago by 11k
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1
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1.2k
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Comment: Comment: Plink-association test
2.2 years ago by Nicolas Rosewick 11k
2
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1
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1.5k
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Comment: Comment: differential gene analysis
2.2 years ago by Nicolas Rosewick 11k
1
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1
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1.0k
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Comment: Comment: Find genes which are related to SNPs
2.3 years ago by Nicolas Rosewick 11k
0
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1
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1.5k
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Comment: Comment: Bedtools multicov outfile file error
2.3 years ago by Nicolas Rosewick 11k
0
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0
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1.2k
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Comment: Comment: RNAseq matrix containing zero values
2.3 years ago by Nicolas Rosewick 11k
0
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1
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1.1k
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Answer: Answer: How to do differential expression without having replicates
2.3 years ago by Nicolas Rosewick 11k
0
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1
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1.2k
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Answer: Answer: GIAB and GRCh38
2.3 years ago by Nicolas Rosewick 11k
1
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2
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2.9k
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Comment: Comment: Error in VQSR first step
2.3 years ago by Nicolas Rosewick 11k
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0
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2.0k
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Comment: Comment: make BED file from existing BIM and FAM files
2.4 years ago by Nicolas Rosewick 11k
1
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1
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1.2k
views
Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
2.4 years ago by Nicolas Rosewick 11k
2
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1
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1.2k
views
Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
2.4 years ago by Nicolas Rosewick 11k
3
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1
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2.7k
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Answer: Answer: IGV coverage bar has color, but no mutation?
2.4 years ago by Nicolas Rosewick 11k
0
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1
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2.7k
views
Comment: Comment: IGV coverage bar has color, but no mutation?
2.4 years ago by Nicolas Rosewick 11k
1
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1
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3.7k
views
Comment: Comment: How to increase the speed of miRanda target prediction program?
2.4 years ago by Nicolas Rosewick 11k
0
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0
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1.1k
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Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 2.5 years ago by 45k • written 2.5 years ago by 11k
2
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0
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2.0k
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Comment: Comment: parallel for 10000 whole exome data
2.5 years ago by Nicolas Rosewick 11k
0
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0
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2.3k
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Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
2.6 years ago by Nicolas Rosewick 11k
0
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1
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2.3k
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Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
2.6 years ago by Nicolas Rosewick 11k
4
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0
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921
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Answer: Answer: pvalue vs adjust p-value
2.7 years ago by Nicolas Rosewick 11k
0
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1
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1.2k
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
2.7 years ago by Nicolas Rosewick 11k
0
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1
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3.4k
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Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
2.7 years ago by Nicolas Rosewick 11k
5
votes
4
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4.5k
views
hg19 interval list
gatk genome interval hg19
updated 3.0 years ago by 4.7k • written 6.1 years ago by 11k
0
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1
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959
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Comment: Comment: Mutations in contiguous sites within a sample
3.1 years ago by Nicolas Rosewick 11k
1
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1
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1.7k
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Comment: Comment: Query hg37 rsid information
3.1 years ago by Nicolas Rosewick 11k
0
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1
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1.9k
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Comment: Comment: sc/sn RNASeq
3.3 years ago by Nicolas Rosewick 11k
0
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1
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1.9k
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Comment: Comment: sc/sn RNASeq
3.3 years ago by Nicolas Rosewick 11k
0
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1
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1.5k
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Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
3.3 years ago by Nicolas Rosewick 11k
0
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0
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1.1k
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Comment: Comment: Reads mapping
3.3 years ago by Nicolas Rosewick 11k
1
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0
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747
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GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
3.4 years ago by Nicolas Rosewick 11k
2
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1
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2.7k
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Comment: Comment: Inflated p-values in QQ-plot
3.4 years ago by Nicolas Rosewick 11k
0
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6
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3.0k
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plink : Batch effect issues after merge of two datasets
plink merge
updated 3.5 years ago by • 0 • written 4.3 years ago by 11k
1
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0
replies
69k
views
Comment: Comment: Insert Size And Fragment Size ?
3.6 years ago by Nicolas Rosewick 11k
1,080 results • Page 1 of 22
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