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Comment: Comment: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
updated 2.7 years ago by 44k • written 9.9 years ago by 11k
2
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1
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35k
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Comment: Comment: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
updated 2.7 years ago by 44k • written 9.9 years ago by 11k
6
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6
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2.9k
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How to represent multiple p-values ?
p-values plot
updated 2.7 years ago by 44k • written 10.0 years ago by 11k
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1
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2.9k
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Comment: C: How to represent multiple p-values ?
10.0 years ago by Nicolas Rosewick 11k
0
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1
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2.9k
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Comment: Comment: How to represent multiple p-values ?
updated 2.7 years ago by 44k • written 10.0 years ago by 11k
6
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6
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4.7k
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HIV : gtf or gff annotation
gtf annotation hiv gff
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
3
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1
reply
20k
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Answer: Answer: how to use log transformation with read count data?
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
2
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1
reply
1.3k
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Recent sequencing platform comparison
plateform sequencing
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
2
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0
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1.3k
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Answer: Answer: Recent sequencing platform comparison
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
1
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1
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3.2k
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Estimate alternative splicing rate using RNA-Seq
RNA-Seq alternativesplicing
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
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0
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3.8k
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Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 20 months ago by 44k • written 10.0 years ago by 11k
0
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1
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6.7k
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Comment: C: Length of miRNA reads after preprocessing steps
10.0 years ago by Nicolas Rosewick 11k
1
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1
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3.8k
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Answer: Answer: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 20 months ago by 44k • written 10.0 years ago by 11k
0
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2
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5.5k
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Comment: Comment: DESeq2 : foldchange calculation with multi-factor design
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
3
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4
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5.5k
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DESeq2 : foldchange calculation with multi-factor design
multifactor deseq2
updated 3.6 years ago by 44k • written 10.0 years ago by 11k
1
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2
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24k
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Comment: C: htseq-counts output merge into one matrix ??
10.0 years ago by Nicolas Rosewick 11k
0
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0
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28k
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Comment: Comment: DESeq2 : three factor conditions
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
3
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1
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28k
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Comment: Comment: DESeq2 : three factor conditions
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
37
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8
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28k
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DESeq2 : three factor conditions
mulitpleconditions DESeq2
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
8
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5
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5.2k
views
How to download a specific sample from TCGA ?
tcga
updated 3.6 years ago by 44k • written 10.1 years ago by 11k
1
vote
5
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2.2k
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Functional consequences of a mutated gene using RNA-Seq
mutation RNA-Seq pathway
updated 2.8 years ago by 44k • written 10.2 years ago by 11k
2
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0
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2.6k
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Answer: Answer: Where to download In-vitro RNA-seq published experiments?
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
0
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1
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3.3k
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Comment: Comment: Common target genes
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
2
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4
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3.3k
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Common target genes
genes pathway target
updated 2.8 years ago by 44k • written 10.2 years ago by 11k
0
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1
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18k
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Comment: Comment: samtools: writing to standard output failed: Broken pipe
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
2
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5
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9.8k
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bigwig : peak distance from specific genomic region
ChIP-Seq bigwig distance closest bed
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
0
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1
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3.2k
views
Comment: Comment: How to assign manually biological function into nodes in Cytoscape?
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
4
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1
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3.2k
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Answer: Answer: How to assign manually biological function into nodes in Cytoscape?
updated 2.8 years ago by 44k • written 10.1 years ago by 11k
0
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1
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6.2k
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Comment: Comment: Gene regulatory networks from RNA-seq data
updated 2.8 years ago by 44k • written 10.2 years ago by 11k
0
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1
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2.2k
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Comment: C: Functional consequences of a mutated gene using RNA-Seq
10.2 years ago by Nicolas Rosewick 11k
0
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0
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5.0k
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Comment: Comment: DESeq input preparation
updated 2.0 years ago by 44k • written 10.2 years ago by 11k
4
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9
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3.7k
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6 follow
Small Genome Mapping Assembly
genome assembly mapping
updated 2.8 years ago by 44k • written 13.0 years ago by 11k
0
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0
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2.6k
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Comment: Comment: How to group/merge genomic positions ?
updated 2.9 years ago by 44k • written 10.2 years ago by 11k
0
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1
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2.6k
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Comment: Comment: How to group/merge genomic positions ?
updated 2.9 years ago by 44k • written 10.2 years ago by 11k
0
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1
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12k
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Comment: Comment: DESeq2 very high p-values and padj
updated 2.9 years ago by 44k • written 10.2 years ago by 11k
3
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6
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2.6k
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How to group/merge genomic positions ?
group position genomic
updated 2.9 years ago by 44k • written 10.2 years ago by 11k
0
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0
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2.6k
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Comment: C: How to group/merge genomic positions ?
10.2 years ago by Nicolas Rosewick 11k
1
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0
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3.3k
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Answer: Answer: k-mer analysis in RNA-seq
updated 2.9 years ago by 44k • written 10.3 years ago by 11k
0
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1
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2.9k
views
Comment: Comment: how to extract all the genes regulated by a specific gene ?
updated 2.9 years ago by 44k • written 10.3 years ago by 11k
0
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0
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2.9k
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Comment: Comment: how to extract all the genes regulated by a specific gene ?
updated 2.9 years ago by 44k • written 10.3 years ago by 11k
3
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4
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2.9k
views
how to extract all the genes regulated by a specific gene ?
pathway reactome kegg gene target
updated 2.9 years ago by 44k • written 10.3 years ago by 11k
0
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0
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2.9k
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Downstream target genes expression analysis (RNA-Seq)
RNA-Seq downstream targets expression
10.3 years ago by Nicolas Rosewick 11k
15
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7
replies
16k
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Multi Thread Bedtools
bedtools parallel
updated 10.3 years ago by 20 • written 12.9 years ago by 11k
0
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0
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24k
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Comment: C: bigwig to peak
10.3 years ago by Nicolas Rosewick 11k
0
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1
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2.9k
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Chip-Seq : how to test if several genomic regions are enriched in histone marks
encode enrichment ChIP-Seq peaks bigwig
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
0
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0
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9.8k
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Comment: Comment: bigwig : peak distance from specific genomic region
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
0
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0
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9.8k
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Comment: C: bigwig : peak distance from specific genomic region
10.3 years ago by Nicolas Rosewick 11k
0
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0
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2.0k
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Comment: Comment: Genomic positions enrichement in enhancer
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
0
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1
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2.0k
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Comment: Comment: Genomic positions enrichement in enhancer
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
3
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4
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2.0k
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Genomic positions enrichement in enhancer
enrichment position ENCODE
updated 3.0 years ago by 44k • written 10.3 years ago by 11k
1,080 results • Page 16 of 22
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