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3.4k
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Comment: Comment: DESeq2 normalization - Found Difference in values when calculated manually
3.2 years ago by Nicolas Rosewick 11k
0
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1
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1.7k
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Comment: Comment: Best practice for running GATK VQSR on X chromosome
3.3 years ago by Nicolas Rosewick 11k
7
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2
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6.5k
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Trinity : How To Co-Assemble Different Samples (Tumor And Healthy)
trinity assembly transcriptome
updated 3.4 years ago by ▴ 20 • written 12.8 years ago by 11k
0
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1
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1.1k
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Answer: Answer: Exclude non shared SNPs from two datasets with PLINK
3.5 years ago by Nicolas Rosewick 11k
0
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0
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1.5k
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Comment: Comment: Genepop for LD testing SNPs dataset
3.5 years ago by Nicolas Rosewick 11k
0
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1
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1.5k
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Comment: Comment: Genepop for LD testing SNPs dataset
3.5 years ago by Nicolas Rosewick 11k
3
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1
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1.4k
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Answer: Answer: High confident germline SNP and INDELS for VQSR for reference genome GRCh37
3.6 years ago by Nicolas Rosewick 11k
0
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1
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2.1k
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Comment: Comment: Understanding GATK evaluation metrics
3.6 years ago by Nicolas Rosewick 11k
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1
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1.1k
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Comment: C: How to generate dotplot using the lastz output file
3.7 years ago by Nicolas Rosewick 11k
0
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1
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2.5k
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Comment: C: plink : Batch effect issues after merge of two datasets
3.7 years ago by Nicolas Rosewick 11k
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1
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2.5k
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Comment: C: plink : Batch effect issues after merge of two datasets
3.7 years ago by Nicolas Rosewick 11k
1
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1
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1.3k
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Answer: A: Setting a threshold based on effective number of independent Snps in GWAS.
3.9 years ago by Nicolas Rosewick 11k
1
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0
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2.1k
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Comment: C: Help Compiling STAR
3.9 years ago by Nicolas Rosewick 11k
9
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5
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8.8k
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R : How To Compute The Melting Temperature Tm
r
updated 2.6 years ago by ▴ 90 • written 12.0 years ago by 11k
0
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0
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726
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Where to find SNP genotype information for ENCODE samples
encode genotype
4.1 years ago by Nicolas Rosewick 11k
0
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1
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1.4k
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Comment: C: Should the number of significantly DE genes rise with the number of SVs estimate
4.1 years ago by Nicolas Rosewick 11k
0
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1
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7.0k
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Comment: C: increase spacing between groups in a bar plot
4.1 years ago by Nicolas Rosewick 11k
0
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1
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7.0k
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Comment: C: increase spacing between groups in a bar plot
4.1 years ago by Nicolas Rosewick 11k
2
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0
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1.1k
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Comment: C: Strange plots I got from R studio
4.1 years ago by Nicolas Rosewick 11k
14
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2
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10k
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Answer: A: What is the VEP Impact column?
4.1 years ago by Nicolas Rosewick 11k
0
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0
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2.3k
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Comment: C: RNA seq data analysis and building co expression network
4.1 years ago by Nicolas Rosewick 11k
0
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1
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1.3k
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Comment: C: Weird results in TopHat2 paired-end alignment
4.1 years ago by Nicolas Rosewick 11k
0
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1
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1.7k
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Comment: C: GWAS results and linkage disequilibrium issue
4.2 years ago by Nicolas Rosewick 11k
0
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1
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856
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Comment: C: converting vcf into simpler version for downstream analysis
4.2 years ago by Nicolas Rosewick 11k
0
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0
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5.6k
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Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
4.2 years ago by Nicolas Rosewick 11k
0
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0
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2.3k
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Comment: C: separate the figure
4.3 years ago by Nicolas Rosewick 11k
0
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1
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2.5k
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Comment: C: How I can describe ridgeplot?
4.3 years ago by Nicolas Rosewick 11k
0
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1
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2.5k
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Comment: C: How I can describe ridgeplot?
4.3 years ago by Nicolas Rosewick 11k
2
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1
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1.2k
views
Answer: A: BWA alignement for RNA Seq
4.3 years ago by Nicolas Rosewick 11k
1
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0
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1.1k
views
Comment: C: Problems removing a subset of individuals from ped files
4.3 years ago by Nicolas Rosewick 11k
0
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0
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676
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Answer: A: Gene expression variability
4.3 years ago by Nicolas Rosewick 11k
2
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1
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6.2k
views
Answer: A: change axis scale on ggplot2
4.3 years ago by Nicolas Rosewick 11k
1
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0
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1.2k
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Answer: A: Permutation test (randomisation test) help - any advice appreciated
4.3 years ago by Nicolas Rosewick 11k
1
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1
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2.9k
views
Comment: C: Imputation results from TOPMED server
4.3 years ago by Nicolas Rosewick 11k
1
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1
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2.9k
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Comment: C: Imputation results from TOPMED server
4.3 years ago by Nicolas Rosewick 11k
2
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1
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3.0k
views
Answer: A: How to make box plot for different gene types
4.3 years ago by Nicolas Rosewick 11k
0
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0
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1.5k
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Comment: C: Reverse allele frequency
4.4 years ago by Nicolas Rosewick 11k
0
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1
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1.5k
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Comment: C: Reverse allele frequency
4.4 years ago by Nicolas Rosewick 11k
0
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1
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975
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Comment: C: Plots for gene expression data
4.4 years ago by Nicolas Rosewick 11k
2
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1
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2.8k
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Comment: C: Calculate p-value from Weibull distribution?
4.4 years ago by Nicolas Rosewick 11k
0
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0
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1.1k
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Comment: C: population stratification using PLINK
4.4 years ago by Nicolas Rosewick 11k
0
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1
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961
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Comment: C: Chromosome position sample files merging in R
4.4 years ago by Nicolas Rosewick 11k
0
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0
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803
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Comment: C: Population stratification with PLINK
4.4 years ago by Nicolas Rosewick 11k
1
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2
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1.3k
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Answer: A: p value for permutation test for gene-interaction data
4.4 years ago by Nicolas Rosewick 11k
1
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0
replies
697
views
Spatial Transcriptomics : Compute expression correlation between two adjacent slides (technical replicates)
spatial transcriptomics
4.4 years ago by Nicolas Rosewick 11k
1
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0
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1.5k
views
Answer: A: tabix on 1000genome files
4.5 years ago by Nicolas Rosewick 11k
1
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1
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797
views
Comment: C: How to create MAplot in R for only one sample?
4.5 years ago by Nicolas Rosewick 11k
0
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0
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822
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Comment: C: Multiple hypothesis testing
4.5 years ago by Nicolas Rosewick 11k
0
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1
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2.3k
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Answer: A: RNA seq data analysis and building co expression network
4.5 years ago by Nicolas Rosewick 11k
0
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1
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3.7k
views
Comment: C: PCA: log transform and scale=T/F?
4.5 years ago by Nicolas Rosewick 11k
1,080 results • Page 2 of 22
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