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339
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Add gene expression boxplot from plotCounts to each row of oncoprint via ComplexHeatmap
R ComplexHeatmap oncoprint
updated 8 months ago by 44k • written 8 months ago by ▴ 230
2
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1
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2.5k
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Answer: Answer: Desq2 input from nf-core/rnaseq
19 months ago by bioinfo8 ▴ 230
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1
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1.1k
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Comment: Comment: Boxplot of contrasts and genes together
20 months ago by bioinfo8 ▴ 230
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4
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1.1k
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Boxplot of contrasts and genes together
boxplot deseq2 expression
updated 20 months ago by ★ 3.0k • written 20 months ago by ▴ 230
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0
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18k
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Comment: Comment: Generating consensus sequence from bam file
3.7 years ago by bioinfo8 ▴ 230
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0
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18k
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Comment: Comment: Generating consensus sequence from bam file
3.7 years ago by bioinfo8 ▴ 230
0
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1
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18k
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Comment: Comment: Generating consensus sequence from bam file
3.7 years ago by bioinfo8 ▴ 230
12
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8
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4.6k
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DESeq2 design for two variables and pairwise comparisons
deseq2 contrasts rnaseq LRT
updated 2.9 years ago by ★ 1.2k • written 3.8 years ago by ▴ 230
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1
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4.6k
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Comment: Comment: DESeq2 design for two variables and pairwise comparisons
3.8 years ago by bioinfo8 ▴ 230
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0
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4.6k
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Comment: Comment: DESeq2 design for two variables and pairwise comparisons
3.8 years ago by bioinfo8 ▴ 230
0
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1
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57k
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Comment: C: reading a bed file in R
updated 5.2 years ago by 44k • written 7.8 years ago by ▴ 230
5
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5
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5.0k
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How can I make boxplot for a single gene from one of the contrasts generated by limma?
limma microarray contrasts boxplot
updated 5.2 years ago by ★ 7.8k • written 5.2 years ago by ▴ 230
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0
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5.0k
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Comment: C: How can I make boxplot for a single gene from one of the contrasts generated by
5.2 years ago by bioinfo8 ▴ 230
0
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1
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2.7k
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CoverageView package_Error in 1:nrow(grDF) : argument of length 0
CoverageView R bioconductor mclapply
updated 6.4 years ago by ▴ 10 • written 7.7 years ago by ▴ 230
2
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0
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6.5k
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Comment: C: Convert gff3 to gtf with R or shell
6.5 years ago by bioinfo8 ▴ 230
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0
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6.5k
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Comment: C: Convert gff3 to gtf with R or shell
6.5 years ago by bioinfo8 ▴ 230
0
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1
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6.5k
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Comment: C: Convert gff3 to gtf with R or shell
6.5 years ago by bioinfo8 ▴ 230
5
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6
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6.5k
views
Convert gff3 to gtf with R or shell
R ngs shell gff3 gtf
6.5 years ago by bioinfo8 ▴ 230
0
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1
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18k
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Comment: C: Fundamentals Of Designing Biological Databases?
7.1 years ago by bioinfo8 ▴ 230
0
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1
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18k
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Answer: A: Fundamentals Of Designing Biological Databases?
7.1 years ago by bioinfo8 ▴ 230
0
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1
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4.6k
views
Extract gene ids from DESeq2 result dataframe for specific comparison based on vennDiagram
deseq2 vennDiagram RNA-Seq limma venn
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 230
0
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0
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3.5k
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Comment: C: Error while running clusterProfiler
7.2 years ago by bioinfo8 ▴ 230
0
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1
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3.5k
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Comment: C: Error while running clusterProfiler
7.2 years ago by bioinfo8 ▴ 230
14
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7
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7.8k
views
Sleuth: Combined lrt and wt tests, clustered heatmap
RNA-Seq Sleuth kallisto R heatmap
updated 7.2 years ago by ▴ 110 • written 8.2 years ago by ▴ 230
1
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3
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3.5k
views
Error while running clusterProfiler
clusterProfiler RNA-Seq R
updated 7.2 years ago by ★ 2.6k • written 7.2 years ago by ▴ 230
6
votes
3
replies
11k
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featureCounts for paired bam files and dealing with multimapping reads?
featureCounts paired multimapping reads RNA-Seq
updated 7.3 years ago by 105k • written 7.3 years ago by ▴ 230
10
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10
replies
4.0k
views
DNA sequence of genes from vcf file
vcf variant calling gene bcftools ensembl
updated 7.3 years ago by • 0 • written 7.6 years ago by ▴ 230
1
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1
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256k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
7.3 years ago by bioinfo8 ▴ 230
0
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1
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256k
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Comment: A: Tools To Calculate Average Coverage For A Bam File?
7.3 years ago by bioinfo8 ▴ 230
0
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1
reply
3.5k
views
RSeQC installation error
ngs QC python RSeQC
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 230
0
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2
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256k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
7.3 years ago by bioinfo8 ▴ 230
0
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1
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2.8k
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Comment: C: Error in running QoRTs after hisat2 alignment
7.3 years ago by bioinfo8 ▴ 230
0
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1
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2.8k
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Comment: C: Error in running QoRTs after hisat2 alignment
7.3 years ago by bioinfo8 ▴ 230
1
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4
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2.8k
views
Error in running QoRTs after hisat2 alignment
RNA-Seq QoRTs paired-end samtools java
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 230
2
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7
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3.2k
views
Whether to use all aligned reads (QC-passed) or only properly-paired reads from rnaseq data?
RNA-Seq properly-paired samtools ngs hisat2
7.3 years ago by bioinfo8 ▴ 230
0
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0
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3.2k
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Comment: C: Whether to use all aligned reads (QC-passed) or only properly-paired reads from
7.3 years ago by bioinfo8 ▴ 230
0
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1
reply
3.2k
views
Comment: C: Whether to use all aligned reads (QC-passed) or only properly-paired reads from
7.3 years ago by bioinfo8 ▴ 230
0
votes
1
reply
3.2k
views
Comment: C: Whether to use all aligned reads (QC-passed) or only properly-paired reads from
7.3 years ago by bioinfo8 ▴ 230
0
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0
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4.6k
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Comment: C: Python scripts to map multiple pair end files to the genome
7.4 years ago by bioinfo8 ▴ 230
0
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1
reply
4.6k
views
Comment: C: Python scripts to map multiple pair end files to the genome
7.4 years ago by bioinfo8 ▴ 230
0
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0
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3.2k
views
Comment: C: Error while running rnaseq_pipeline.sh provided by hisat2
7.4 years ago by bioinfo8 ▴ 230
4
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11
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3.2k
views
Error while running rnaseq_pipeline.sh provided by hisat2
hisat2 paired-end RNA-Seq bash shell
7.4 years ago by bioinfo8 ▴ 230
0
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1
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3.2k
views
Comment: C: Error while running rnaseq_pipeline.sh provided by hisat2
7.4 years ago by bioinfo8 ▴ 230
0
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0
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3.2k
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Comment: C: Error while running rnaseq_pipeline.sh provided by hisat2
7.4 years ago by bioinfo8 ▴ 230
0
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1
reply
3.2k
views
Comment: C: Error while running rnaseq_pipeline.sh provided by hisat2
7.4 years ago by bioinfo8 ▴ 230
0
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1
reply
3.2k
views
Comment: C: Error while running rnaseq_pipeline.sh provided by hisat2
7.4 years ago by bioinfo8 ▴ 230
0
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1
reply
7.6k
views
Comment: C: Add filename to fasta headers of multiple fasta files inside loop
7.5 years ago by bioinfo8 ▴ 230
0
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1
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7.6k
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Comment: C: Add filename to fasta headers of multiple fasta files inside loop
7.5 years ago by bioinfo8 ▴ 230
0
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0
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7.6k
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Comment: C: Add filename to fasta headers of multiple fasta files inside loop
7.5 years ago by bioinfo8 ▴ 230
0
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1
reply
7.6k
views
Comment: C: Add filename to fasta headers of multiple fasta files inside loop
7.5 years ago by bioinfo8 ▴ 230
162 results • Page 1 of 4
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