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3
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2
replies
274
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Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
Bacterial Workstation Whole genome AMR
updated 8 days ago by ★ 2.8k • written 9 days ago by ▴ 80
0
votes
0
replies
223
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS WGS Pathway denovo
updated 6 months ago by 44k • written 6 months ago by ▴ 80
0
votes
0
replies
649
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers TRINITY
7 months ago by mathavanbioinfo ▴ 80
0
votes
1
reply
455
views
What alternative method would recommend for conducting gene ontology analysis?
WEGO gene-ontology
updated 8 months ago by ★ 2.5k • written 8 months ago by ▴ 80
1
vote
3
replies
995
views
Can shotgun metagenome approaches effectively target both RNA and DNA viruses in low-viral-load water samples?
RNA-virus binning metagenome abundance shotgun
updated 8 months ago by ▴ 590 • written 8 months ago by ▴ 80
0
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0
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995
views
Comment: Comment: Can shotgun metagenome approaches effectively target both RNA and DNA viruses in
8 months ago by mathavanbioinfo ▴ 80
4
votes
1
reply
508
views
why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
8 months ago by mathavanbioinfo ▴ 80
4
votes
4
replies
620
views
Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
illumina RNA-seq paired-end
updated 8 months ago by 20k • written 8 months ago by ▴ 80
0
votes
0
replies
302
views
Gene Prediction Breaker3
prediction protein-seq GTF Breaker3 gene
8 months ago by mathavanbioinfo ▴ 80
1
vote
1
reply
908
views
What is the data requirement for shotgun metagenome analysis of soil samples from plastic land-filling, coal mining, and petroleum oil refineries fie…
shotgun-metagenome species-level binning gtdbk data-requirement
updated 9 months ago by 147k • written 9 months ago by ▴ 80
0
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1
reply
912
views
Comment: Comment: how to download BF ,CC and MF
9 months ago by mathavanbioinfo ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: How to visualize multiple bacterial genomes with circos?
10 months ago by mathavanbioinfo ▴ 80
1
vote
1
reply
376
views
Genome Analysis Insights: BUSCO Evaluation of Repetitive Elements and Ploidy Level in Crocus sativus"
coverage ploidy complex-genome BUSCO
updated 10 months ago by 44k • written 10 months ago by ▴ 80
2
votes
3
replies
1.4k
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 12 months ago by • 0 • written 4.0 years ago by ▴ 80
0
votes
1
reply
630
views
How to remove cloning vector sequence from bacterial assembled genome?
assembly removal bacterial genome vector
updated 17 months ago by 147k • written 17 months ago by ▴ 80
3
votes
2
replies
1.1k
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 24 months ago by 15k • written 24 months ago by ▴ 80
2
votes
1
reply
554
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 2.2 years ago by ★ 28k • written 2.2 years ago by ▴ 80
1
vote
2
replies
660
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 20 months ago by 44k • written 2.2 years ago by ▴ 80
1
vote
1
reply
640
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 2.3 years ago by ★ 1.9k • written 2.3 years ago by ▴ 80
0
votes
0
replies
402
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 2.6 years ago by 8.9k • written 2.6 years ago by ▴ 80
1
vote
1
reply
842
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 2.9 years ago by 8.9k • written 2.9 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 2.9 years ago by 147k • written 2.9 years ago by ▴ 80
0
votes
0
replies
552
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 80
0
votes
1
reply
1.5k
views
How to calculate phred score of fastq files?
linux phred fastq
updated 3.2 years ago by 147k • written 3.2 years ago by ▴ 80
0
votes
2
replies
992
views
How to download all the genome fasta file for plants?
standalone blast
updated 3.2 years ago by ★ 3.8k • written 3.2 years ago by ▴ 80
0
votes
0
replies
2.7k
views
Comment: Comment: How to check if a Fastq file is contaminated with other strains?
3.3 years ago by mathavanbioinfo ▴ 80
0
votes
0
replies
493
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 3.3 years ago by 5.9k • written 3.3 years ago by ▴ 80
4
votes
7
replies
3.4k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 20 months ago by 44k • written 3.4 years ago by ▴ 80
1
vote
1
reply
1.6k
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 3.4 years ago by 44k • written 3.4 years ago by ▴ 80
0
votes
1
reply
951
views
Comment: Comment: extract the ids and key values
3.4 years ago by mathavanbioinfo ▴ 80
0
votes
4
replies
951
views
extract the ids and key values
extract grep
updated 3.4 years ago by 8.9k • written 3.4 years ago by ▴ 80
0
votes
0
replies
2.1k
views
Comment: Comment: How to generate GTF file from BLAST output?
3.4 years ago by mathavanbioinfo ▴ 80
6
votes
6
replies
2.1k
views
How to generate GTF file from BLAST output?
GTF
3.4 years ago by mathavanbioinfo ▴ 80
0
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0
replies
2.1k
views
Comment: Comment: How to generate GTF file from BLAST output?
3.4 years ago by mathavanbioinfo ▴ 80
0
votes
1
reply
765
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 3.4 years ago by 147k • written 3.4 years ago by ▴ 80
3
votes
4
replies
1.5k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 3.4 years ago by 20k • written 3.4 years ago by ▴ 80
0
votes
1
reply
796
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 3.4 years ago by 27k • written 3.4 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
3.4 years ago by mathavanbioinfo ▴ 80
0
votes
3
replies
1.2k
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 3.5 years ago by 7.6k • written 3.5 years ago by ▴ 80
0
votes
1
reply
1.0k
views
Comment: Comment: Where I can get the gtf file of antheraea mylitta
3.6 years ago by mathavanbioinfo ▴ 80
5
votes
3
replies
1.0k
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 3.6 years ago by 15k • written 3.6 years ago by ▴ 80
0
votes
0
replies
602
views
Extracting the genes associated drugs?
bank Drug
3.6 years ago by mathavanbioinfo ▴ 80
4
votes
5
replies
2.6k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 3.7 years ago by ★ 3.8k • written 3.7 years ago by ▴ 80
2
votes
2
replies
792
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
3.9 years ago by mathavanbioinfo ▴ 80
4
votes
6
replies
3.6k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 4.0 years ago by ▴ 180 • written 4.0 years ago by ▴ 80
2
votes
1
reply
1.1k
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 4.0 years ago by ▴ 480 • written 4.0 years ago by ▴ 80
0
votes
1
reply
3.6k
views
Comment: A: How to perform the lncRNA enrichment analysis?
4.0 years ago by mathavanbioinfo ▴ 80
1
vote
1
reply
743
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 4.0 years ago by 27k • written 4.0 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: How create annotation file for WGCNA for RNA-Seq data?
4.4 years ago by mathavanbioinfo ▴ 80
1
vote
2
replies
1.3k
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 4.4 years ago by 88k • written 4.4 years ago by ▴ 80
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