Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.8k
views
SpliceR genome session error
RNA-Seq SpliceR
updated 4.5 years ago by 20 • written 8.8 years ago by ★ 1.6k
0
votes
1
reply
1.9k
views
HOMER Hi-C with more than one enzyme
Hi-C HOMER
updated 4.5 years ago by • 0 • written 7.3 years ago by ★ 1.6k
0
votes
0
replies
50k
views
Answer: A: Concatenating fastq.gz files across lanes
4.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
1.6k
views
Answer: C: Converting multiple GSE data into expression matrix
5.5 years ago by Satyajeet Khare ★ 1.6k
2
votes
2
replies
5.9k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.5 years ago by Satyajeet Khare ★ 1.6k
4
votes
0
replies
967
views
Answer: A: problem with vcf file by gatk
5.5 years ago by Satyajeet Khare ★ 1.6k
3
votes
0
replies
5.4k
views
Comment: C: HISAT2 index building
5.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
4.1k
views
Comment: C: DE novo call from trio
5.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
4.1k
views
Comment: C: DE novo call from trio
5.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
4.1k
views
Comment: C: DE novo call from trio
5.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
4.1k
views
Comment: C: DE novo call from trio
5.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
4.1k
views
Comment: C: DE novo call from trio
5.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
4.1k
views
Comment: C: DE novo call from trio
5.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
1.6k
views
Removing the tagged variants after variant filtration step
GATK SNP
5.8 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.4k
views
Answer: A: Error in match.arg in boxplot - oligo package
5.9 years ago by Satyajeet Khare ★ 1.6k
0
votes
2
replies
4.5k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
updated 6.2 years ago by 45k • written 6.3 years ago by ★ 1.6k
0
votes
0
replies
4.5k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
updated 6.2 years ago by 45k • written 6.3 years ago by ★ 1.6k
3
votes
7
replies
4.5k
views
ERROR MESSAGE: QD annotation at VariantRecalibrator
GATK snp VariantRecalibrator
updated 6.2 years ago by 20 • written 6.3 years ago by ★ 1.6k
0
votes
0
replies
4.9k
views
Comment: C: RNA-seq Data Excel Formatting
6.3 years ago by Satyajeet Khare ★ 1.6k
2
votes
0
replies
4.5k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
6.3 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
4.5k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
6.3 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.6k
views
Comment: C: Reference allele is too long message GATK
6.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.2k
views
Comment: C: Convert colorspace fastq to basespace fastq
6.5 years ago by Satyajeet Khare ★ 1.6k
3
votes
2
replies
3.6k
views
Genome-wide CpG island finder
genome
updated 7.1 years ago by 20 • written 7.5 years ago by ★ 1.6k
1
vote
1
reply
1.7k
views
Answer: A: match gives me all NA in annotating my genes
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.5k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
3.5k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.5k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
3.5k
views
Answer: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.3k
views
Comment: C: Does Cufflinks report chimeric transcripts/fusion genes?
7.2 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
5.4k
views
Comment: C: samtools rmdup error
7.2 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
17k
views
Comment: C: Bowtie2-output to file
7.2 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
1.5k
views
Comment: A: FIMO outputs only Chr1 hits
7.3 years ago by Satyajeet Khare ★ 1.6k
4
votes
0
replies
16k
views
Answer: A: Setting the first row as column name in R
7.3 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.5k
views
Comment: C: Expression plot of GoI using EdgeR
7.3 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
1.6k
views
Comment: C: CuffDiff results does not seem correct
7.3 years ago by Satyajeet Khare ★ 1.6k
2
votes
3
replies
2.5k
views
Expression plot of GoI using EdgeR
RNA-Seq
updated 7.3 years ago by 89k • written 7.3 years ago by ★ 1.6k
0
votes
0
replies
1.5k
views
Comment: C: MEME-FIMO return different count of target for the same sequence
7.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.2k
views
Comment: C: Research Bazaar 2018
7.4 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
7.1k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
8.5k
views
Comment: C: How to screen for rRNA and gDNA contamination in RNA-seq data?
7.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
7.1k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
8.5k
views
Comment: C: How to screen for rRNA and gDNA contamination in RNA-seq data?
7.4 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.5k
views
Comment: C: DGE on protein-coding and lncRNAs separately?
7.5 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
1.9k
views
Comment: C: How many cell lines for RNA-seq comparisons?
7.5 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
5.3k
views
Comment: C: Cutoff for TPM value
7.5 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.0k
views
Comment: C: Question about mapping motif binding sites to genome location
7.5 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
9.8k
views
Comment: C: How to run a Perl script
7.5 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
7.3k
views
Comment: C: Differential gene expression based on "exon" or "CDS"?
7.5 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
7.8k
views
Comment: C: bash script for RNA seq analysis
7.5 years ago by Satyajeet Khare ★ 1.6k
283 results • Page 1 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6