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1
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1.7k
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SpliceR genome session error
RNA-Seq SpliceR
updated 4.1 years ago by 20 • written 8.4 years ago by ★ 1.6k
0
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1
reply
1.8k
views
HOMER Hi-C with more than one enzyme
Hi-C HOMER
updated 4.1 years ago by • 0 • written 6.9 years ago by ★ 1.6k
0
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0
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46k
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Answer: A: Concatenating fastq.gz files across lanes
4.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
1.5k
views
Answer: C: Converting multiple GSE data into expression matrix
5.1 years ago by Satyajeet Khare ★ 1.6k
2
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2
replies
5.3k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by Satyajeet Khare ★ 1.6k
4
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0
replies
904
views
Answer: A: problem with vcf file by gatk
5.2 years ago by Satyajeet Khare ★ 1.6k
3
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0
replies
5.1k
views
Comment: C: HISAT2 index building
5.2 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
3.7k
views
Comment: C: DE novo call from trio
5.2 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
3.7k
views
Comment: C: DE novo call from trio
5.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
reply
3.7k
views
Comment: C: DE novo call from trio
5.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
reply
3.7k
views
Comment: C: DE novo call from trio
5.3 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
3.7k
views
Comment: C: DE novo call from trio
5.3 years ago by Satyajeet Khare ★ 1.6k
1
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0
replies
3.7k
views
Comment: C: DE novo call from trio
5.3 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
1.5k
views
Removing the tagged variants after variant filtration step
GATK SNP
5.4 years ago by Satyajeet Khare ★ 1.6k
0
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0
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3.3k
views
Answer: A: Error in match.arg in boxplot - oligo package
5.5 years ago by Satyajeet Khare ★ 1.6k
0
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2
replies
4.2k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
updated 5.9 years ago by 44k • written 5.9 years ago by ★ 1.6k
0
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0
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4.2k
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Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
updated 5.9 years ago by 44k • written 5.9 years ago by ★ 1.6k
3
votes
7
replies
4.2k
views
ERROR MESSAGE: QD annotation at VariantRecalibrator
GATK snp VariantRecalibrator
updated 5.9 years ago by 20 • written 5.9 years ago by ★ 1.6k
0
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0
replies
4.6k
views
Comment: C: RNA-seq Data Excel Formatting
5.9 years ago by Satyajeet Khare ★ 1.6k
2
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0
replies
4.2k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
5.9 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
4.2k
views
Comment: C: ERROR MESSAGE: QD annotation at VariantRecalibrator
5.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
2.4k
views
Comment: C: Reference allele is too long message GATK
6.0 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
3.0k
views
Comment: C: Convert colorspace fastq to basespace fastq
6.1 years ago by Satyajeet Khare ★ 1.6k
3
votes
2
replies
3.5k
views
Genome-wide CpG island finder
genome
updated 6.7 years ago by 20 • written 7.1 years ago by ★ 1.6k
1
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1
reply
1.6k
views
Answer: A: match gives me all NA in annotating my genes
6.7 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
3.2k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
6.7 years ago by Satyajeet Khare ★ 1.6k
1
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1
reply
3.2k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.2k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
6.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
3.2k
views
Answer: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.1k
views
Comment: C: Does Cufflinks report chimeric transcripts/fusion genes?
6.8 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
5.1k
views
Comment: C: samtools rmdup error
6.8 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
16k
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Comment: C: Bowtie2-output to file
6.8 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
1.4k
views
Comment: A: FIMO outputs only Chr1 hits
6.9 years ago by Satyajeet Khare ★ 1.6k
4
votes
0
replies
15k
views
Answer: A: Setting the first row as column name in R
6.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
2.3k
views
Comment: C: Expression plot of GoI using EdgeR
6.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
1.5k
views
Comment: C: CuffDiff results does not seem correct
6.9 years ago by Satyajeet Khare ★ 1.6k
2
votes
3
replies
2.3k
views
Expression plot of GoI using EdgeR
RNA-Seq
updated 6.9 years ago by 88k • written 6.9 years ago by ★ 1.6k
0
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0
replies
1.4k
views
Comment: C: MEME-FIMO return different count of target for the same sequence
7.0 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.0k
views
Comment: C: Research Bazaar 2018
7.0 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
6.6k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.0 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
7.8k
views
Comment: C: How to screen for rRNA and gDNA contamination in RNA-seq data?
7.0 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
6.6k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.0 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
7.8k
views
Comment: C: How to screen for rRNA and gDNA contamination in RNA-seq data?
7.0 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.3k
views
Comment: C: DGE on protein-coding and lncRNAs separately?
7.1 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
1.8k
views
Comment: C: How many cell lines for RNA-seq comparisons?
7.1 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
5.1k
views
Comment: C: Cutoff for TPM value
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
1.9k
views
Comment: C: Question about mapping motif binding sites to genome location
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
9.6k
views
Comment: C: How to run a Perl script
7.1 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
6.8k
views
Comment: C: Differential gene expression based on "exon" or "CDS"?
7.1 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
7.1k
views
Comment: C: bash script for RNA seq analysis
7.1 years ago by Satyajeet Khare ★ 1.6k
283 results • Page 1 of 6
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