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Comment: Comment: counting reads in a fastq file using a refrence fasta file
22 months ago by vaslanzadeh ▴ 20
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2
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840
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counting reads in a fastq file using a refrence fasta file
fastq alignment readCount
22 months ago by vaslanzadeh ▴ 20
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2
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4.1k
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Interpreting trim_galore report
RNA-Seq
updated 3.7 years ago by 147k • written 7.3 years ago by ▴ 20
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621
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Comment: C: Amplicon variant calling from PacBio CCS reads
3.8 years ago by vaslanzadeh ▴ 20
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2
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621
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Amplicon variant calling from PacBio CCS reads
sequencing SNP
updated 3.8 years ago by 147k • written 3.8 years ago by ▴ 20
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5
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1.5k
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Pysam prints wrong outputs
alignment RNA-Seq
updated 5.5 years ago by 20 • written 5.7 years ago by ▴ 20
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1.5k
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Comment: C: Pysam prints wrong outputs
5.6 years ago by vaslanzadeh ▴ 20
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1.5k
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Comment: C: Pysam prints wrong outputs
updated 5.7 years ago by 10k • written 5.7 years ago by ▴ 20
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1
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25k
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Comment: C: Position Of Mismatches Per Read From A Sam/Bam File
7.1 years ago by vaslanzadeh ▴ 20
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1
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2.0k
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low mapping rate, finding possible source of contamination
RNA-Seq genome alignment blast
7.2 years ago by vaslanzadeh ▴ 20
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1
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11k
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Comment: A: Identify sequencing machine based on fastq-file/reads
7.3 years ago by vaslanzadeh ▴ 20
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3.2k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
8.5 years ago by vaslanzadeh ▴ 20
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3.2k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
8.5 years ago by vaslanzadeh ▴ 20
2
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4
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3.2k
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How to count the reads that overlap with 3' splice sites or 5' splice sites?
alignment RNA-Seq rna-seq
8.5 years ago by vaslanzadeh ▴ 20
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