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Answer: A: Mismatch between base and target genotypes causing a "no variants remained" erro
4.6 years ago by Sam ★ 4.8k
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639
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Answer: A: GWAS data integration
4.7 years ago by Sam ★ 4.8k
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1.2k
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Comment: C: Can I convert a beta to a standardised beta, only knowing the standard error of
4.7 years ago by Sam ★ 4.8k
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7.3k
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Comment: C: How to calculate the LD from a list of SNPs using plink
4.7 years ago by Sam ★ 4.8k
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4.2k
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Comment: C: Questions about Polygenic Risk Score (PRS) and PRSice-2
4.8 years ago by Sam ★ 4.8k
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4.2k
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Answer: A: Questions about Polygenic Risk Score (PRS) and PRSice-2
4.8 years ago by Sam ★ 4.8k
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2.5k
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Answer: A: Hwo to do quality control steps on UKBiobank data?
4.8 years ago by Sam ★ 4.8k
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3.1k
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Comment: C: How to load 1000 genome vcf and tbi file into R
4.8 years ago by Sam ★ 4.8k
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3.4k
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Comment: C: Effect Allele Frequency in base summary statistics for PRSs calculation
4.8 years ago by Sam ★ 4.8k
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1.3k
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Answer: A: Do you always need to clump polygenic risk scores?
4.8 years ago by Sam ★ 4.8k
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3.1k
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Answer: A: How to load 1000 genome vcf and tbi file into R
4.8 years ago by Sam ★ 4.8k
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2.1k
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Comment: C: Genetic QC checks in R - packages and errors
4.8 years ago by Sam ★ 4.8k
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2
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3.4k
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Answer: A: Effect Allele Frequency in base summary statistics for PRSs calculation
4.8 years ago by Sam ★ 4.8k
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1
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3.4k
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Comment: C: Effect Allele Frequency in base summary statistics for PRSs calculation
4.8 years ago by Sam ★ 4.8k
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2.1k
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Comment: C: Genetic QC checks in R - packages and errors
4.8 years ago by Sam ★ 4.8k
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1
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2.1k
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Comment: C: Genetic QC checks in R - packages and errors
4.8 years ago by Sam ★ 4.8k
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1
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1.3k
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Comment: C: Batch effect for SNP array
4.8 years ago by Sam ★ 4.8k
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3.5k
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Comment: C: Correlation of PRS obtained by plink and PRSice
4.8 years ago by Sam ★ 4.8k
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2.0k
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Comment: C: extract vcf subinfo
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 4.8k
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2.4k
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Comment: C: Can tophat/cufflinks output vary on different runs?
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 4.8k
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2.0k
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Comment: C: extract vcf subinfo
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 4.8k
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1
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2.4k
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Answer: A: Can tophat/cufflinks output vary on different runs?
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 4.8k
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3.2k
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Comment: C: Annovar using VCF file
updated 4.9 years ago by 44k • written 9.1 years ago by ★ 4.8k
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2
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3.5k
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Answer: A: Correlation of PRS obtained by plink and PRSice
4.9 years ago by Sam ★ 4.8k
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2.1k
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Answer: A: Which software should be used to get SNPs different from reference but same in a
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 4.8k
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1
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2.0k
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Answer: A: How to estimate SNP-based heritability?
4.9 years ago by Sam ★ 4.8k
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3.4k
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Comment: C: Extract only sequences that have N nucleotides
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
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0
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22k
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Comment: C: Filters/Quality For Vcf Generated By Freebayes
updated 4.9 years ago by 44k • written 11.1 years ago by ★ 4.8k
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1
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5.8k
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Comment: C: Snpsift extractFields : How Fields Annotation ANN[*].XX is working ?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
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1
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6.4k
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Comment: C: Remove rows in a matrix containing Hamming distance less than a set value
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
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0
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2.4k
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Answer: C: Valine to Isoleucine mutation
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
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2.3k
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Comment: C: What variant callers are faster than samtools?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
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2.3k
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Answer: C: What variant callers are faster than samtools?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
3
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1
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1.9k
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Comment: C: Length of RNAseq reads
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 4.8k
3
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0
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1.6k
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Answer: A: Batch replcement of fasta header
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
1
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0
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3.3k
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Comment: C: The effect of sample size and relatedness in target sample in polygenic risk sco
5.0 years ago by Sam ★ 4.8k
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1
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3.2k
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Comment: C: Differential Expression with Factorial Design and adjust for Lane+Batch Effect
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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3.2k
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Comment: C: Differential Expression with Factorial Design and adjust for Lane+Batch Effect
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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8.2k
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Comment: C: GenomeStudio genotype format to VCF?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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2.9k
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Comment: C: vcf filtering and query
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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3.8k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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1
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8.2k
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Answer: A: GenomeStudio genotype format to VCF?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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1.3k
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Answer: A: GATK 3.8 > GATK 4 best way to step up
5.0 years ago by Sam ★ 4.8k
0
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1
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9.0k
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Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
0
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0
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9.0k
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Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
1
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2
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9.0k
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Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
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0
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2.7k
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Comment: C: How to Design Exome Sequencing study?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 4.8k
1
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1
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2.6k
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Answer: A: Applying polygenic scores to data
5.0 years ago by Sam ★ 4.8k
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0
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1.5k
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Comment: C: How to create association file for mus musculus ?
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 4.8k
1
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0
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3.8k
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Answer: A: variance stabilized or log transformed data for DE analysis
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 4.8k
647 results • Page 6 of 13
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