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Determining ploidy via read ratios with HaplotypeCaller: skewed results?
SNP gatk ploidy illumina R
updated 5.3 years ago by 20 • written 8.1 years ago by ▴ 80
12
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5
replies
4.9k
views
6 follow
Viewing CNV read depth data along multiple chromosomes in a single plot via R
R sequencing
updated 6.1 years ago by ▴ 80 • written 7.5 years ago by ▴ 80
1
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0
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3.2k
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Answer: A: GFF to fasta
6.8 years ago by mmats010 ▴ 80
1
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1
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3.2k
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GFF to fasta
sequencing annotation perl gff genome
6.8 years ago by mmats010 ▴ 80
0
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1
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5.9k
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Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
7.4 years ago by mmats010 ▴ 80
1
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7
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5.9k
views
Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
bionano dovetail pacbio denovo illumina
updated 7.4 years ago by 8.7k • written 7.4 years ago by ▴ 80
0
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0
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5.9k
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Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
7.4 years ago by mmats010 ▴ 80
0
votes
0
replies
5.9k
views
Comment: C: Comparing Hi-c/dovetail, BioNano, and pacbio assemblies. Pick the best one?
7.4 years ago by mmats010 ▴ 80
2
votes
0
replies
4.9k
views
Comment: C: Viewing CNV read depth data along multiple chromosomes in a single plot via R
7.5 years ago by mmats010 ▴ 80
0
votes
2
replies
3.1k
views
Why is bwa terminating alignment and exiting the script without an error message?
alignment bwa sequencing genome
updated 7.5 years ago by ▴ 20 • written 8.4 years ago by ▴ 80
0
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0
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1.7k
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Comment: C: Eliminating calls for a particular chromosome, per sample, in a multisample VCF
7.6 years ago by mmats010 ▴ 80
1
vote
2
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1.7k
views
Eliminating calls for a particular chromosome, per sample, in a multisample VCF
SNP vcf aneuploid
updated 7.6 years ago by 164k • written 7.6 years ago by ▴ 80
1
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0
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2.3k
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Comment: C: Is there a quick method to extract regularly-spaced features/SNPs from a VCF fil
7.9 years ago by mmats010 ▴ 80
4
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2
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2.3k
views
Is there a quick method to extract regularly-spaced features/SNPs from a VCF file?
SNP gatk vcf sequencing mapping
updated 7.9 years ago by ▴ 460 • written 7.9 years ago by ▴ 80
0
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0
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3.3k
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Comment: C: Is there a tool that can output the raw genotype call (i.e., 0/1) rather than th
8.1 years ago by mmats010 ▴ 80
13
votes
6
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3.3k
views
Is there a tool that can output the raw genotype call (i.e., 0/1) rather than the actual basecall (A/T) from a VCF file?
gatk variantstotable SNP genotyping
updated 8.1 years ago by 14k • written 8.1 years ago by ▴ 80
0
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0
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4.8k
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Answer: A: Best method to call SNPs/genotype many bam files from only a defined list of var
8.3 years ago by mmats010 ▴ 80
0
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3
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4.8k
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Best method to call SNPs/genotype many bam files from only a defined list of variants/SNPs?
samtools genotyping bam sequencing genome
updated 20 months ago by 44k • written 8.6 years ago by ▴ 80
4
votes
3
replies
4.4k
views
NCBI edirect "command not found"
edirect entrez ncbi commandline unix
updated 8.6 years ago by 147k • written 8.6 years ago by ▴ 80
0
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0
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4.4k
views
Comment: C: NCBI edirect "command not found"
updated 8.6 years ago by 147k • written 8.6 years ago by ▴ 80
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