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4
votes
3
replies
2.7k
views
Merge several bigWig files (with different intervals) into single GRanges object
ChIP-Seq R Gviz GenomicFeatures rtracklayer
updated 4.1 years ago by 20 • written 4.6 years ago by ▴ 100
0
votes
0
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2.7k
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Comment: C: Merge several bigWig files (with different intervals) into single GRanges object
4.6 years ago by Roman Hillje ▴ 100
0
votes
1
reply
14k
views
Comment: C: Downloading paired end fastq from SRA
5.4 years ago by Roman Hillje ▴ 100
0
votes
1
reply
14k
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Comment: C: Downloading paired end fastq from SRA
5.4 years ago by Roman Hillje ▴ 100
1
vote
1
reply
14k
views
Comment: C: Downloading paired end fastq from SRA
5.4 years ago by Roman Hillje ▴ 100
0
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2
replies
14k
views
Comment: A: Downloading paired end fastq from SRA
5.4 years ago by Roman Hillje ▴ 100
0
votes
0
replies
942
views
Taking scores from DiffBind for other analysis?
ChIP-Seq DiffBind
6.2 years ago by Roman Hillje ▴ 100
0
votes
3
replies
1.8k
views
Get positions in BAM with reads supporting at least 2 different nucleotides
RNA-Seq
updated 6.4 years ago by 165k • written 6.4 years ago by ▴ 100
0
votes
1
reply
9.1k
views
Comment: C: List of TSS from GTF file
6.8 years ago by Roman Hillje ▴ 100
6
votes
5
replies
9.1k
views
List of TSS from GTF file
TSS GTF
updated 6.8 years ago by 36k • written 6.8 years ago by ▴ 100
0
votes
0
replies
2.0k
views
Merging multiple scRNAseq samples: Normalize first and then merge or merge and normalize all together?
scRNAseq
7.1 years ago by Roman Hillje ▴ 100
3
votes
0
replies
7.2k
views
Answer: A: ChromHMM Output Descriptions
7.2 years ago by Roman Hillje ▴ 100
0
votes
0
replies
2.6k
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Comment: C: Extract specific nucleotide AND total read information (tags) from BAM
7.2 years ago by Roman Hillje ▴ 100
0
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0
replies
2.6k
views
Comment: C: Extract specific nucleotide AND total read information (tags) from BAM
7.2 years ago by Roman Hillje ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Extract specific nucleotide AND total read information (tags) from BAM
7.2 years ago by Roman Hillje ▴ 100
3
votes
7
replies
2.6k
views
Extract specific nucleotide AND total read information (tags) from BAM
bam samtools
updated 7.2 years ago by 165k • written 7.2 years ago by ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Extract specific nucleotide AND total read information (tags) from BAM
7.2 years ago by Roman Hillje ▴ 100
1
vote
2
replies
2.2k
views
RNAseq: reads in different positions in IGV vs IGB
RNA-Seq igv igb
7.3 years ago by Roman Hillje ▴ 100
3
votes
1
reply
3.6k
views
Analysis of BAF from SNP array data
snp BAF
updated 7.3 years ago by ▴ 10 • written 8.7 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Comment: C: DiffBind: Counting reads in overlapping regions
7.5 years ago by Roman Hillje ▴ 100
0
votes
2
replies
1.6k
views
DiffBind: Counting reads in overlapping regions
DiffBind R ChIP-Seq
7.5 years ago by Roman Hillje ▴ 100
0
votes
0
replies
2.1k
views
Comment: C: TCGA: Stratify breast cancer cases based on presence of Her2 mutation and get tr
7.6 years ago by Roman Hillje ▴ 100
2
votes
2
replies
2.1k
views
TCGA: Stratify breast cancer cases based on presence of Her2 mutation and get transcription data?
TCGA API RNA-Seq
updated 7.6 years ago by ★ 4.7k • written 7.6 years ago by ▴ 100
0
votes
0
replies
14k
views
Comment: C: Extract further information from deepTools plotPCA
7.6 years ago by Roman Hillje ▴ 100
3
votes
6
replies
14k
views
Extract further information from deepTools plotPCA
ChIP-Seq deepTools
7.6 years ago by Roman Hillje ▴ 100
0
votes
1
reply
14k
views
Comment: C: Extract further information from deepTools plotPCA
7.6 years ago by Roman Hillje ▴ 100
0
votes
1
reply
14k
views
Comment: C: Extract further information from deepTools plotPCA
7.6 years ago by Roman Hillje ▴ 100
0
votes
0
replies
9.7k
views
Comment: C: How to obtain TSS from list of given genes
7.8 years ago by Roman Hillje ▴ 100
0
votes
0
replies
2.4k
views
Comment: C: Comparison of ChIPseq enrichment in specific regions
7.8 years ago by Roman Hillje ▴ 100
2
votes
4
replies
2.4k
views
Comparison of ChIPseq enrichment in specific regions
ChIP-Seq deeptools
updated 7.8 years ago by ★ 2.1k • written 7.8 years ago by ▴ 100
0
votes
0
replies
2.4k
views
Comment: C: Comparison of ChIPseq enrichment in specific regions
7.8 years ago by Roman Hillje ▴ 100
0
votes
0
replies
1.5k
views
Comment: C: General quantification of signal enrichment in ChIPseq experiments
7.9 years ago by Roman Hillje ▴ 100
1
vote
2
replies
1.5k
views
General quantification of signal enrichment in ChIPseq experiments
ChIP-Seq
updated 7.9 years ago by 105k • written 7.9 years ago by ▴ 100
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