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0
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1
reply
832
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Comment: Comment: dittoHeatmap; adding column labels on the heatmap
3 months ago by Varun Gupta ★ 1.3k
0
votes
1
reply
832
views
Comment: Comment: dittoHeatmap; adding column labels on the heatmap
3 months ago by Varun Gupta ★ 1.3k
1
vote
6
replies
832
views
dittoHeatmap; adding column labels on the heatmap
pheatmap ComplexHeatmap dittoHeatmap
updated 3 months ago by ★ 18k • written 3 months ago by ★ 1.3k
0
votes
1
reply
515
views
Comment: Comment: Removing features from RNA assay in seurat
4 months ago by Varun Gupta ★ 1.3k
2
votes
3
replies
515
views
Removing features from RNA assay in seurat
R SEURAT sc-RNA-Seq
updated 4 months ago by ▴ 690 • written 4 months ago by ★ 1.3k
0
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0
replies
611
views
Comment: Comment: Dealing with 2 different layers of counts within RNA assay in seurat
4 months ago by Varun Gupta ★ 1.3k
1
vote
2
replies
611
views
Dealing with 2 different layers of counts within RNA assay in seurat
R seurat
updated 4 months ago by ★ 3.0k • written 4 months ago by ★ 1.3k
2
votes
4
replies
647
views
When to use integration with scRNASeq
R SEURAT scRNA-seq
updated 4 months ago by 6.1k • written 4 months ago by ★ 1.3k
0
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1
reply
647
views
Comment: Comment: When to use integration with scRNASeq
4 months ago by Varun Gupta ★ 1.3k
1
vote
1
reply
384
views
Extracting column from one seurat object based on common column and adding to the other object
R SEURAT
updated 4 months ago by ★ 3.0k • written 4 months ago by ★ 1.3k
0
votes
0
replies
631
views
FilterMutectCalls mutect2
gatk mutect2
2.1 years ago by Varun Gupta ★ 1.3k
29
votes
4
replies
26k
views
Bwa Mem -M Option
updated 2.9 years ago by • 0 • written 10.9 years ago by ★ 1.3k
0
votes
0
replies
19k
views
Comment: Comment: survfit(Surv()) P-value interpretation for 3 survival curves?
3.3 years ago by Varun Gupta ★ 1.3k
13
votes
9
replies
8.4k
views
Read Counts For Genes
read counts
updated 4.2 years ago by ▴ 130 • written 12.9 years ago by ★ 1.3k
1
vote
2
replies
2.2k
views
Bowtie1 Options For Mirna
mirna
updated 4.2 years ago by 20 • written 10.9 years ago by ★ 1.3k
7
votes
4
replies
16k
views
Wiggle File 2 Bed File
wiggle format conversion bed
updated 4.5 years ago by 20 • written 13.1 years ago by ★ 1.3k
0
votes
0
replies
6.0k
views
Comment: C: bowtie1 -m --best --strata options
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.3k
0
votes
0
replies
17k
views
Comment: C: Mismatch Option In Bowtie2
updated 5.1 years ago by 44k • written 11.6 years ago by ★ 1.3k
0
votes
1
reply
6.9k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 5.1 years ago by 44k • written 10.8 years ago by ★ 1.3k
0
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0
replies
6.9k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 5.1 years ago by 44k • written 10.8 years ago by ★ 1.3k
0
votes
1
reply
13k
views
Comment: C: padj value in DEseq package
updated 5.1 years ago by 44k • written 10.8 years ago by ★ 1.3k
0
votes
1
reply
7.0k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
updated 5.3 years ago by 44k • written 9.5 years ago by ★ 1.3k
0
votes
0
replies
8.1k
views
Answer: A: Customize IGV coverage track in R
updated 5.4 years ago by 44k • written 10.7 years ago by ★ 1.3k
1
vote
2
replies
4.2k
views
Tophat Alignment Score And Parameters
tophat2
updated 2.1 years ago by 44k • written 11.9 years ago by ★ 1.3k
0
votes
1
reply
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
votes
3
replies
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
votes
0
replies
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
votes
1
reply
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
votes
2
replies
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
1
vote
1
reply
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
votes
1
reply
20k
views
Comment: C: extracting the soft clipped seq only from a sam file
updated 5.7 years ago by 44k • written 10.1 years ago by ★ 1.3k
17
votes
4
replies
6.3k
views
fastq file on the basis of read length
fastq
updated 3.3 years ago by 44k • written 10.6 years ago by ★ 1.3k
1
vote
1
reply
2.5k
views
Filtering reads on the basis of percentage of ambiguous(N's) characters
fastq RNA-Seq filter
updated 6.7 years ago by 165k • written 6.7 years ago by ★ 1.3k
2
votes
8
replies
8.4k
views
Picard Mark Duplicates
picard markduplicates
updated 6.7 years ago by ▴ 90 • written 6.8 years ago by ★ 1.3k
0
votes
0
replies
8.4k
views
Comment: C: Picard Mark Duplicates
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
8.4k
views
Comment: C: Picard Mark Duplicates
6.8 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
8.4k
views
Comment: C: Picard Mark Duplicates
6.8 years ago by Varun Gupta ★ 1.3k
1
vote
0
replies
2.9k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
6.9 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
2.9k
views
Comment: C: genomeCoverageBed for per nucleotide coverage
6.9 years ago by Varun Gupta ★ 1.3k
6
votes
4
replies
2.9k
views
genomeCoverageBed for per nucleotide coverage
bedtools
updated 6.9 years ago by 89k • written 6.9 years ago by ★ 1.3k
4
votes
12
replies
4.9k
views
Saving IGV images for bigwig files
igv bigwig
updated 7.0 years ago by 15k • written 7.0 years ago by ★ 1.3k
0
votes
1
reply
4.9k
views
Comment: C: Saving IGV images for bigwig files
7.0 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
4.9k
views
Comment: C: Saving IGV images for bigwig files
7.0 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
4.9k
views
Comment: C: Saving IGV images for bigwig files
7.0 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
4.9k
views
Comment: C: Saving IGV images for bigwig files
7.0 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
65k
views
Comment: C: How To Efficiently Parse A Huge Fastq File?
7.1 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
7.1k
views
Comment: C: Any tools to quantify intron retention in RNAseq data?
7.1 years ago by Varun Gupta ★ 1.3k
4
votes
4
replies
12k
views
Rpkm Calculation
rpkm
updated 7.4 years ago by 20 • written 13.0 years ago by ★ 1.3k
0
votes
1
reply
3.5k
views
Comment: C: querying blast database for rna seq reads
7.5 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
3.5k
views
Comment: C: querying blast database for rna seq reads
7.5 years ago by Varun Gupta ★ 1.3k
225 results • Page 1 of 5
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