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Answer: Answer: What is the proper way to identify the cell types of scRNAseq cluster?
2 minutes ago by ATpoint 82k
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166
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Comment: Comment: error in R code
20 hours ago by ATpoint 82k
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251
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Answer: Answer: Tissue-specific DEG analysis with DEseq2
22 hours ago by ATpoint 82k
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258
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Answer: Answer: install.packages("imudata")
23 hours ago by ATpoint 82k
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247
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Comment: Comment: creating batch colum for batch correction
2 days ago by ATpoint 82k
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401
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
3 days ago by ATpoint 82k
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273
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Comment: Comment: Generating mpileup file using samtools
3 days ago by ATpoint 82k
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220
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Answer: Answer: Analysis of intronic reads included scRNA-seq data
3 days ago by ATpoint 82k
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331
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Comment: Comment: What analysis suitable to identify similarly expressed genes between two samples
3 days ago by ATpoint 82k
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181
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Answer: Answer: DSEQ2 analysis
3 days ago by ATpoint 82k
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282
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Comment: Comment: Does comparing two different groups to a common third group introduce bias in th
3 days ago by ATpoint 82k
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0
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280
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
4 days ago by ATpoint 82k
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331
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Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
4 days ago by ATpoint 82k
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280
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
4 days ago by ATpoint 82k
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239
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Comment: Comment: Odd alignment question/finding
4 days ago by ATpoint 82k
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309
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Comment: Comment: DESeq2 processing problems
5 days ago by ATpoint 82k
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1
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203
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Answer: Answer: MA plot of shrunken fold change
6 days ago by ATpoint 82k
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618
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Answer: Answer: High Malat-1 expression in single cell data
7 days ago by ATpoint 82k
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163
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Comment: Comment: Longitudinal analysis of subpopulations: which approach is better?
7 days ago by ATpoint 82k
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312
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Comment: Comment: How to assign cell types after integration in scRNA
8 days ago by ATpoint 82k
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299
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Answer: Answer: ChIP-seq datasets: input samples omitted?
8 days ago by ATpoint 82k
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312
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Comment: Comment: How to assign cell types after integration in scRNA
8 days ago by ATpoint 82k
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2.0k
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Comment: Comment: NGS forensics: how to know if data is fabricated
9 days ago by ATpoint 82k
2
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0
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374
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
10 days ago by ATpoint 82k
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0
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407
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Comment: Comment: PCA plot
10 days ago by ATpoint 82k
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3.7k
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Comment: Comment: Treatment VS Control in Single Cell RNAseq analysis
11 days ago by ATpoint 82k
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248
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Comment: Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
11 days ago by ATpoint 82k
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337
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Answer: Answer: Sequence read length shorter than flow cell specification
11 days ago by ATpoint 82k
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328
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Comment: Comment: Highest variable features in single cell data
11 days ago by ATpoint 82k
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557
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Comment: Comment: To get p-values for the TPM
12 days ago by ATpoint 82k
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1
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379
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Comment: Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
13 days ago by ATpoint 82k
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392
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
13 days ago by ATpoint 82k
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307
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
14 days ago by ATpoint 82k
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146
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Comment: Comment: Displaced fragment length distribution in ATAC-seq
14 days ago by ATpoint 82k
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1
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319
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Comment: Comment: Per base sequence content error in RNAseq analysis
14 days ago by ATpoint 82k
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1
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379
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
14 days ago by ATpoint 82k
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1
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319
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Answer: Answer: Per base sequence content error in RNAseq analysis
14 days ago by ATpoint 82k
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583
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
16 days ago by ATpoint 82k
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1.6k
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Comment: Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
16 days ago by ATpoint 82k
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
16 days ago by ATpoint 82k
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307
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Comment: Comment: Could you please assist in identifying this cluster?
17 days ago by ATpoint 82k
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5.3k
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Comment: Comment: Memory usage of picard Samsort
17 days ago by ATpoint 82k
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296
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Answer: Answer: DEseq2
18 days ago by ATpoint 82k
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523
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
20 days ago by ATpoint 82k
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0
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327
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Comment: Comment: Bwa sampe - BGI
20 days ago by ATpoint 82k
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0
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392
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Comment: Comment: Ensembl gene id conversion
20 days ago by ATpoint 82k
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1
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404
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Answer: Answer: Which experiments generate Position Frequency Matrix?
20 days ago by ATpoint 82k
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1
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299
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
20 days ago by ATpoint 82k
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237
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Comment: Comment: Error in edgeR/Deseq2 Analysis
20 days ago by ATpoint 82k
2
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1
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410
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
20 days ago by ATpoint 82k
9,687 results • Page 1 of 194
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