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Comment:
Comment: Signature Matrix Modifications/Subclustering
5 days ago by
ATpoint
88k
1
vote
1
reply
647
views
Comment:
Comment: Heatmap for visualizing the differentially expressed genes in RNA-seq data
5 days ago by
ATpoint
88k
1
vote
1
reply
647
views
Comment:
Comment: Heatmap for visualizing the differentially expressed genes in RNA-seq data
6 days ago by
ATpoint
88k
3
votes
1
reply
647
views
Answer:
Answer: Heatmap for visualizing the differentially expressed genes in RNA-seq data
6 days ago by
ATpoint
88k
0
votes
0
replies
299
views
Comment:
Comment: single-cell differential expression of unbalanced cell number
6 days ago by
ATpoint
88k
1
vote
0
replies
323
views
Comment:
Comment: IGV view for Chromatin accessibility ATAC-seq
10 days ago by
ATpoint
88k
0
votes
0
replies
303
views
Answer:
Answer: Can you compare GETx and TCGA miRNA non normalized counts a
10 days ago by
ATpoint
88k
1
vote
0
replies
429
views
Answer:
Answer: ATAC-seq analysis
10 days ago by
ATpoint
88k
1
vote
0
replies
419
views
Comment:
Comment: GSEA analysis in R
11 days ago by
ATpoint
88k
0
votes
1
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419
views
Answer:
Answer: GSEA analysis in R
11 days ago by
ATpoint
88k
0
votes
0
replies
607
views
Answer:
Answer: Random seed in scanpy
12 days ago by
ATpoint
88k
1
vote
1
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986
views
Comment:
Comment: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
12 days ago by
ATpoint
88k
0
votes
1
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434
views
Comment:
Comment: use AverageExpression to stratify samples
14 days ago by
ATpoint
88k
1
vote
1
reply
733
views
Comment:
Comment: Mass-spectrometry proteomics
18 days ago by
ATpoint
88k
0
votes
1
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986
views
Comment:
Comment: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
18 days ago by
ATpoint
88k
2
votes
1
reply
986
views
Answer:
Answer: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
19 days ago by
ATpoint
88k
0
votes
0
replies
583
views
Comment:
Comment: ATACSEQ normlization for bigwig files
19 days ago by
ATpoint
88k
0
votes
0
replies
583
views
Comment:
Comment: ATACSEQ normlization for bigwig files
19 days ago by
ATpoint
88k
0
votes
1
reply
583
views
Answer:
Answer: ATACSEQ normlization for bigwig files
19 days ago by
ATpoint
88k
2
votes
0
replies
452
views
Answer:
Answer: Error with bigWigAverageOverBed
21 days ago by
ATpoint
88k
0
votes
1
reply
459
views
Comment:
Comment: Correcting Technical Artifacts in Cross-Dataset Pseudobulk Analysis
24 days ago by
ATpoint
88k
0
votes
1
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838
views
Comment:
Comment: RNAseq meta-analysis to identify “consistently expressed” genes
25 days ago by
ATpoint
88k
1
vote
0
replies
513
views
Comment:
Comment: Multi-omic trajectory on CITE-Seq data
25 days ago by
ATpoint
88k
0
votes
1
reply
513
views
Comment:
Comment: Multi-omic trajectory on CITE-Seq data
26 days ago by
ATpoint
88k
1
vote
0
replies
904
views
Comment:
Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
26 days ago by
ATpoint
88k
1
vote
1
reply
1.4k
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Comment:
Comment: STAR aligner problem on local laptop
27 days ago by
ATpoint
88k
1
vote
0
replies
1.4k
views
Comment:
Comment: STAR aligner problem on local laptop
27 days ago by
ATpoint
88k
1
vote
1
reply
904
views
Comment:
Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
27 days ago by
ATpoint
88k
2
votes
2
replies
904
views
Comment:
Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
27 days ago by
ATpoint
88k
0
votes
1
reply
904
views
Comment:
Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
27 days ago by
ATpoint
88k
3
votes
1
reply
511
views
Answer:
Answer: DESeq2 outliers-should I be concerned?
28 days ago by
ATpoint
88k
0
votes
1
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491
views
Comment:
Comment: Unexpected negative correlation between gene-length and counts
28 days ago by
ATpoint
88k
0
votes
0
replies
1.3k
views
Comment:
Comment: Facing issue with output of nextflow pipeline
4 weeks ago by
ATpoint
88k
1
vote
0
replies
391
views
Answer:
Answer: Minimum Number of Cells for Downstream Analysis after subsetting a particular ce
4 weeks ago by
ATpoint
88k
1
vote
0
replies
1.1k
views
Comment:
Comment: Heatmap of a transformed deseq object with pheatmap
4 weeks ago by
ATpoint
88k
2
votes
1
reply
539
views
Answer:
Answer: How to visualize Combat-seq corrected counts
4 weeks ago by
ATpoint
88k
2
votes
1
reply
677
views
Comment:
Comment: Single cell expression and accessibility integration using cellxgene data
4 weeks ago by
ATpoint
88k
0
votes
1
reply
463
views
Answer:
Answer: Kallisto to tximport to deseq2
5 weeks ago by
ATpoint
88k
1
vote
0
replies
790
views
Answer:
Answer: Pooling Replicates in Omics Analysis: Trade-off Between Cost and Data Robustness
5 weeks ago by
ATpoint
88k
0
votes
0
replies
631
views
Answer:
Answer: RNA-Sequencing Analysis when control samples paired-end and tumour samples singl
5 weeks ago by
ATpoint
88k
2
votes
0
replies
435
views
Comment:
Comment: Averaging multiple IgG BAM files for use as a control in ChromHMM
5 weeks ago by
ATpoint
88k
4
votes
0
replies
524
views
Comment:
Comment: What are BED files?
5 weeks ago by
ATpoint
88k
0
votes
0
replies
769
views
Comment:
Comment: Ggplot make boxplots more wide
5 weeks ago by
ATpoint
88k
1
vote
1
reply
769
views
Comment:
Comment: Ggplot make boxplots more wide
5 weeks ago by
ATpoint
88k
0
votes
1
reply
921
views
Answer:
Answer: Transcript identification and quantification
6 weeks ago by
ATpoint
88k
0
votes
0
replies
423
views
Comment:
Comment: Treatment of nanoparticles after buying before the experiment
6 weeks ago by
ATpoint
88k
0
votes
0
replies
668
views
Comment:
Comment: Is this the correct DESeq2 design for model with interaction terms and batch eff
6 weeks ago by
ATpoint
88k
0
votes
1
reply
600
views
Comment:
Comment: Best way to combine biological replicate peaks?
6 weeks ago by
ATpoint
88k
2
votes
0
replies
560
views
Answer:
Answer: Why is this interaction result not significant in DESeq2
6 weeks ago by
ATpoint
88k
0
votes
0
replies
9.0k
views
Comment:
Comment: fastq-dump: command not found, what is wrong?
6 weeks ago by
ATpoint
88k
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