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1.3k
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Comment: Comment: Geo2R troubleshooting
10 months ago by ATpoint 86k
2
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1
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711
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Answer: Answer: scRNA-seq downstream analysis on raw vs batch corrected counts
10 months ago by ATpoint 86k
1
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0
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646
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Comment: Comment: bulk seq vs. sc-seq
10 months ago by ATpoint 86k
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1
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745
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Comment: Comment: Batch effect
10 months ago by ATpoint 86k
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0
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377
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Comment: Comment: different numbers of genes for WGCNA and Differential expression
10 months ago by ATpoint 86k
1
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1
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745
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Comment: Comment: Batch effect
10 months ago by ATpoint 86k
1
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0
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656
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Comment: Comment: Why statistic test should I use?
10 months ago by ATpoint 86k
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613
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Comment: Comment: How to fix DESeq2 Error in checkFullRank(modelMatrix)
10 months ago by ATpoint 86k
4
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2
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989
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Answer: Answer: Three fastq files
10 months ago by ATpoint 86k
1
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0
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340
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Comment: Comment: single cell annotation of human data using mouse data
10 months ago by ATpoint 86k
1
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1
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670
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Comment: Comment: average of one column for each category of another column
updated 10 months ago by 12k • written 10 months ago by 86k
1
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0
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551
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Comment: Comment: Samtools not installing properly on mac
10 months ago by ATpoint 86k
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1
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922
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Comment: Comment: A lot of unknown/weird gene names after alignment with cellranger or starsolo
10 months ago by ATpoint 86k
2
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1
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922
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Answer: Answer: A lot of unknown/weird gene names after alignment with cellranger or starsolo
10 months ago by ATpoint 86k
0
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2
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883
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Comment: Comment: Docker for Bioconductor Packages
10 months ago by ATpoint 86k
0
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0
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453
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Comment: Comment: Multimapped and unique mapped for BAM file of RRBS data
10 months ago by ATpoint 86k
0
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1
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883
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Comment: Comment: Docker for Bioconductor Packages
10 months ago by ATpoint 86k
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0
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463
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Comment: Comment: Cell Cycle Labeled Fastq files
10 months ago by ATpoint 86k
2
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1
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1.4k
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Comment: Comment: Tower Server configuration for NGS data analysis
10 months ago by ATpoint 86k
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649
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Comment: Comment: csaw - is there a way to identify composition bias in a dataset?
10 months ago by ATpoint 86k
2
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1
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641
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Answer: Answer: Differential expression analysis of lncRNA
10 months ago by ATpoint 86k
2
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0
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467
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Answer: Answer: Optimal MACS2/3 configuration for paired-end ChIP-seq data: `-f BAM` versus `-f
10 months ago by ATpoint 86k
1
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0
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463
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Answer: Answer: DESeq2 and Gene Set Enrichment Analysis
10 months ago by ATpoint 86k
1
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1
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511
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Comment: Comment: I ran STAR, but essential output files did not generate.
11 months ago by ATpoint 86k
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0
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443
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Comment: Comment: Correcting Farm effects
11 months ago by ATpoint 86k
0
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1
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725
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Comment: Comment: How quickly can an SRA submission proceed directly from S3
11 months ago by ATpoint 86k
1
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0
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411
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Comment: Comment: Change default values for maximum amplicon size in STAR?
11 months ago by ATpoint 86k
0
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1
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649
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Comment: Comment: csaw - is there a way to identify composition bias in a dataset?
11 months ago by ATpoint 86k
0
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1
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598
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Comment: Comment: Read counts from quantmode of Star and Stringtie
11 months ago by ATpoint 86k
0
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2
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1.4k
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Comment: Comment: Accessing SRA file with multiple fastqs under one accession
11 months ago by ATpoint 86k
0
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0
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729
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Comment: Comment: Doubt about fpkm file
11 months ago by ATpoint 86k
0
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1
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1.3k
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Comment: Comment: nfcore/fetchngs : Error: fasterq-dump cannot create this file
11 months ago by ATpoint 86k
0
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2
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729
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Comment: Comment: Doubt about fpkm file
11 months ago by ATpoint 86k
0
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1
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729
views
Comment: Comment: Doubt about fpkm file
11 months ago by ATpoint 86k
0
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0
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524
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Comment: Comment: Docker container not running (or stopping immediately)
11 months ago by ATpoint 86k
1
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1
reply
828
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
11 months ago by ATpoint 86k
0
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0
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342
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Comment: Comment: filtering gene sets when performing scRNAseq data analysis
11 months ago by ATpoint 86k
0
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1
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828
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
11 months ago by ATpoint 86k
1
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0
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368
views
Comment: Comment: Analysis of .csv data in R software
11 months ago by ATpoint 86k
3
votes
1
reply
775
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Answer: Answer: Trouble with samtools view not filtering specified regions of bam file
11 months ago by ATpoint 86k
0
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2
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1000
views
Comment: Comment: sam file error
11 months ago by ATpoint 86k
1
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1
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1000
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Answer: Answer: sam file error
11 months ago by ATpoint 86k
2
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0
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499
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Answer: Answer: will the features.tsv file from 10X chromium be same for all donor individuals?
11 months ago by ATpoint 86k
2
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1
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1.6k
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
11 months ago by ATpoint 86k
1
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0
replies
1.8k
views
Comment: Comment: Is MACS3 the same as MACS2?
11 months ago by ATpoint 86k
1
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0
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926
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
11 months ago by ATpoint 86k
2
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0
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813
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Answer: Answer: FASTQ-DUMP error while downloading HGDP datadset
11 months ago by ATpoint 86k
0
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1
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926
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
11 months ago by ATpoint 86k
0
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2
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1.0k
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Comment: Comment: Problem in Salmon when indexing Rattus_norvegicus
11 months ago by ATpoint 86k
2
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0
replies
953
views
Comment: Comment: Single-cell RNA-seq: Preprocessing: Data integration and batch correction-2
11 months ago by ATpoint 86k
10,075 results • Page 13 of 202
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