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816
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Answer: Answer: Question on batch effect for a bulk RNA seq analysis
10 weeks ago by ATpoint 86k
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1
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630
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Comment: Comment: Explanation of DESeq factor leveling
10 weeks ago by ATpoint 86k
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342
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Comment: Comment: cutadapt not working when calling in a bash code with qsub
10 weeks ago by ATpoint 86k
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2
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630
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Comment: Comment: Explanation of DESeq factor leveling
10 weeks ago by ATpoint 86k
3
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1
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426
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Answer: Answer: creat histogram in R
10 weeks ago by ATpoint 86k
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246
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Comment: Comment: What are the epithelial cells subtype in esophagus tissue ?
10 weeks ago by ATpoint 86k
6
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1
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1.2k
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Comment: Comment: How to do datamining in bioinformatics
10 weeks ago by ATpoint 86k
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1
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320
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Answer: Answer: Selecting appropriate expressed repeat annotation for Velocyto
10 weeks ago by ATpoint 86k
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1
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856
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Comment: Comment: ATAC-seq peaks centered between TSS and TES
10 weeks ago by ATpoint 86k
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0
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430
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Comment: Comment: lacking reference transcriptome
10 weeks ago by ATpoint 86k
2
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856
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Answer: Answer: ATAC-seq peaks centered between TSS and TES
10 weeks ago by ATpoint 86k
0
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0
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435
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Comment: Comment: Detection of unknown sub cells in a population of cells using DEGs from scRNAseq
11 weeks ago by ATpoint 86k
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1
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435
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Answer: Answer: Detection of unknown sub cells in a population of cells using DEGs from scRNAseq
11 weeks ago by ATpoint 86k
2
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0
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522
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Comment: Comment: RNA-Seq multiple lane
11 weeks ago by ATpoint 86k
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1
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415
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Comment: Comment: Error during batch correction/PCA
11 weeks ago by ATpoint 86k
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338
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Answer: Answer: Matrix for a Fisher's exact test
11 weeks ago by ATpoint 86k
0
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1
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956
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Comment: Comment: featureCounts segmentation fault
11 weeks ago by ATpoint 86k
1
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0
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508
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Answer: Answer: When to use integration with scRNASeq
11 weeks ago by ATpoint 86k
3
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1
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1.7k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
11 weeks ago by ATpoint 86k
2
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0
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356
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Answer: Answer: LOC gene on opposite DNA-strand causes lower log2FC value?
11 weeks ago by ATpoint 86k
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0
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2.2k
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Comment: Comment: Using GEOquery
11 weeks ago by ATpoint 86k
0
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1
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432
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Comment: Comment: Cross-strand correlation for paired-end ChIP-seq data
11 weeks ago by ATpoint 86k
1
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0
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369
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Comment: Comment: Numreads from samtools for Differential Expression
12 weeks ago by ATpoint 86k
0
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0
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633
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Comment: Comment: Issue understanding ATAC-seq PCA
12 weeks ago by ATpoint 86k
0
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1
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633
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Comment: Comment: Issue understanding ATAC-seq PCA
12 weeks ago by ATpoint 86k
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0
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528
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Comment: Comment: Some questions about motif enrichment in Homer
12 weeks ago by ATpoint 86k
3
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2
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1.0k
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Comment: Comment: A simple and lightweight tool for filtering csv file wirtten in Rust
12 weeks ago by ATpoint 86k
1
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0
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879
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Comment: Comment: How does edgeR's filterByExpr work?
12 weeks ago by ATpoint 86k
0
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1
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528
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Comment: Comment: Some questions about motif enrichment in Homer
12 weeks ago by ATpoint 86k
1
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0
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289
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Comment: Comment: INterpreting MA plot - DEG
12 weeks ago by ATpoint 86k
1
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0
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243
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Comment: Comment: Samtools: exclude secondary and supplementary alignments
12 weeks ago by ATpoint 86k
1
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0
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328
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Comment: Comment: ATAC-Seq Differential Peak Analysis
12 weeks ago by ATpoint 86k
0
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0
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1.9k
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Comment: Comment: RNA-SEQ where only a subset of genes is of interest
12 weeks ago by ATpoint 86k
1
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1
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455
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Answer: Answer: Padjusted value = 1 in wilcox test
3 months ago by ATpoint 86k
0
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0
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684
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Answer: Answer: No such variable: nextflow
3 months ago by ATpoint 86k
2
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1
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684
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Comment: Comment: No such variable: nextflow
updated 3 months ago by 9.8k • written 3 months ago by 86k
0
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1
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978
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Comment: Comment: Differential gene expression
3 months ago by ATpoint 86k
1
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1
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684
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Comment: Comment: No such variable: nextflow
3 months ago by ATpoint 86k
0
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1
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978
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Comment: Comment: Differential gene expression
3 months ago by ATpoint 86k
3
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1
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353
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Answer: Answer: TPM normalization of counts
3 months ago by ATpoint 86k
0
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0
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647
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Comment: Comment: Batch correction preserving biological difference
3 months ago by ATpoint 86k
1
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1
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488
views
Comment: Comment: Recommendations for performing Bulk RNA sequencing on non-model organism with po
3 months ago by ATpoint 86k
0
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1
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701
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Comment: Comment: Seeking Advice on Using `edgeR` and `variancePartition` for RNA-seq Data with Mu
3 months ago by ATpoint 86k
0
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0
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532
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
3 months ago by ATpoint 86k
0
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0
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430
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Comment: Comment: 3 samples (control) vs 3 samples (condition) 100M coverage data
3 months ago by ATpoint 86k
0
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0
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543
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Answer: Answer: rna-seq heatmap z-score calculation - TPM?
3 months ago by ATpoint 86k
1
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2
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532
views
Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
3 months ago by ATpoint 86k
1
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1
reply
532
views
Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
3 months ago by ATpoint 86k
0
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0
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5.8k
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Comment: Comment: bam2rpkm by bedtools
4 months ago by ATpoint 86k
2
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1
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750
views
Answer: Answer: p-value/adjusted p-vlaue cutoff
4 months ago by ATpoint 86k
10,073 results • Page 3 of 202
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