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3
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1.3k
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Comment: Comment: How to improve a bioinformatics study and paper so that it is not considered "to
5 months ago by ATpoint 86k
1
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0
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529
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Answer: Answer: Trimmomatic in windows
5 months ago by ATpoint 86k
1
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2
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654
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Comment: Comment: featureCounts output
5 months ago by ATpoint 86k
1
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1
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675
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Comment: Comment: DESeq2 results vs. shrinkage results
5 months ago by ATpoint 86k
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2
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433
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Comment: Comment: Transcription factors associated with Differentially Expressed Genes
5 months ago by ATpoint 86k
0
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0
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356
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Comment: Comment: samtools sort
5 months ago by ATpoint 86k
2
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1
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433
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Answer: Answer: Transcription factors associated with Differentially Expressed Genes
5 months ago by ATpoint 86k
0
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0
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746
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
5 months ago by ATpoint 86k
1
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1
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356
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Answer: Answer: samtools sort
5 months ago by ATpoint 86k
1
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1
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746
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
5 months ago by ATpoint 86k
0
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1
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746
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
5 months ago by ATpoint 86k
0
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2
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394
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Answer: Answer: RNA seq data analysis
5 months ago by ATpoint 86k
2
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0
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375
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Comment: Comment: Open question: What's the best way to share an R environement?
5 months ago by ATpoint 86k
1
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1
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310
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Comment: Comment: Normalizing a fold change matrix
5 months ago by ATpoint 86k
1
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0
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450
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Comment: Comment: Normalizacion RNASeq Doubts
5 months ago by ATpoint 86k
1
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1
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450
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Comment: Comment: Normalizacion RNASeq Doubts
5 months ago by ATpoint 86k
0
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0
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1.1k
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Comment: Comment: Mouse or Rat Gene Expression Data Similar to GTEx
5 months ago by ATpoint 86k
0
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1
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468
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Comment: Comment: Suggestions for resource for running R training
5 months ago by ATpoint 86k
4
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0
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346
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Answer: Answer: conda R environment warnings - error
5 months ago by ATpoint 86k
0
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0
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458
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Answer: Answer: Using Pseudobulk Approach for Identifying Marker Genes Within a Single Condition
5 months ago by ATpoint 86k
1
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1
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422
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Comment: Comment: Make the normalized counts from treatment relative to control-EdgeR
5 months ago by ATpoint 86k
0
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1
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422
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Answer: Answer: Make the normalized counts from treatment relative to control-EdgeR
5 months ago by ATpoint 86k
1
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0
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286
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Comment: Comment: RNA-seq
5 months ago by ATpoint 86k
0
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0
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714
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Comment: Comment: Atac-seq shift single-end data
5 months ago by ATpoint 86k
0
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0
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721
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
5 months ago by ATpoint 86k
1
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1
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721
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Answer: Answer: How to account for total number of cells when aggregating for pseudobulk?
5 months ago by ATpoint 86k
1
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0
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531
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Comment: Comment: Upward Sloping P Value Distribution in ATAC-seq Analysis
5 months ago by ATpoint 86k
2
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2
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498
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Answer: Answer: Strange peaks in normalized FPKM data
5 months ago by ATpoint 86k
1
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1
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353
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Answer: Answer: NA is p-valueas & p.adj in DESeq2
5 months ago by ATpoint 86k
0
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0
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555
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Comment: Comment: Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
5 months ago by ATpoint 86k
1
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1
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435
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Comment: Comment: Removal of low read counts prior to DESeq2?
5 months ago by ATpoint 86k
0
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0
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782
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Comment: Comment: Bulk RNA-Seq Data That's Only Tumors (No Normal/Reference)?
updated 5 months ago by 44k • written 5 months ago by 86k
0
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1
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782
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Comment: Comment: Bulk RNA-Seq Data That's Only Tumors (No Normal/Reference)?
5 months ago by ATpoint 86k
1
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0
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391
views
Comment: Comment: No peaks detected in chipseq analysis-macs3
5 months ago by ATpoint 86k
1
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0
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745
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Comment: Comment: Open the Seurat count matrix in RStudio
5 months ago by ATpoint 86k
0
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0
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940
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Comment: Comment: CutNtag normalization without spike in
5 months ago by ATpoint 86k
0
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0
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922
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Comment: Comment: Consultant to update a Snakemake workflow with the new Kubernetes executor plugi
6 months ago by ATpoint 86k
3
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1
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414
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Answer: Answer: Statistical analysis of quantified proteomic data: ctrl vs. mut
6 months ago by ATpoint 86k
1
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0
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303
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Comment: Comment: glmGamPoi offset matrix details
6 months ago by ATpoint 86k
0
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1
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940
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Comment: Comment: CutNtag normalization without spike in
6 months ago by ATpoint 86k
1
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0
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336
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Comment: Comment: Public dataset for tracking Doctors' treatment histories
6 months ago by ATpoint 86k
1
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0
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630
views
Comment: Comment: Trimmomatic error: Exception in thread "main" java.lang.NumberFormatException
6 months ago by ATpoint 86k
0
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1
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630
views
Comment: Comment: Trimmomatic error: Exception in thread "main" java.lang.NumberFormatException
6 months ago by ATpoint 86k
0
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1
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418
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Comment: Comment: Human sequence data mapped to mouse genome
6 months ago by ATpoint 86k
0
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1
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940
views
Comment: Comment: CutNtag normalization without spike in
6 months ago by ATpoint 86k
1
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1
reply
940
views
Comment: Comment: CutNtag normalization without spike in
6 months ago by ATpoint 86k
0
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0
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951
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Answer: Answer: gene expression normaliztion
6 months ago by ATpoint 86k
0
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0
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884
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Comment: Comment: Overlapping cut and tag H3k27 peaks and ATAC-Seq peaks
6 months ago by ATpoint 86k
0
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1
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607
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Comment: Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
6 months ago by ATpoint 86k
1
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1
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607
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Comment: Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
6 months ago by ATpoint 86k
10,074 results • Page 5 of 202
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