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Comment: Comment: How to find transcription factors list?
6 months ago by ATpoint 86k
1
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1
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803
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Comment: Comment: Removing batch effect in time-series data
6 months ago by ATpoint 86k
1
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703
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Comment: Comment: Strand-specific quantification of RNA-seq data without strand-aware mapping
6 months ago by ATpoint 86k
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1
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703
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Comment: Comment: Strand-specific quantification of RNA-seq data without strand-aware mapping
6 months ago by ATpoint 86k
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0
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1.1k
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Comment: Comment: Super ehancers
6 months ago by ATpoint 86k
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1
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636
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Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
6 months ago by ATpoint 86k
4
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1
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407
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Answer: Answer: Is it acceptable to combine RNA-seq datasets?
6 months ago by ATpoint 86k
3
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1
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636
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Answer: Answer: Statistical test to compare cell type proportions in scrnaseq data
6 months ago by ATpoint 86k
1
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1
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590
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Comment: Comment: Fold changes reversed - DESeq2
6 months ago by ATpoint 86k
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1
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704
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Comment: Comment: filter reads based on mapped length
6 months ago by ATpoint 86k
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0
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844
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Comment: Comment: Moving labels in a volcano plot with ggplot2
6 months ago by ATpoint 86k
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1
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342
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Answer: Answer: Analysing CITE-seq data where only 4 samples are CITE-seq and rest 11 are scRNA-
6 months ago by ATpoint 86k
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1
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335
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Answer: Answer: .tar files Microarray
6 months ago by ATpoint 86k
1
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1
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803
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Comment: Comment: Removing batch effect in time-series data
6 months ago by ATpoint 86k
2
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0
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456
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Answer: Answer: Why there are only two .fastq files in scATAC-seq raw data?
6 months ago by ATpoint 86k
1
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0
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1.1k
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Comment: Comment: Alignment tool for very short reads (25bp)
6 months ago by ATpoint 86k
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1
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2.0k
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Comment: Comment: Failed to download data from EBI with ascp
6 months ago by ATpoint 86k
1
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1
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482
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Comment: Comment: Is TMM apropriated for Welch test between gender?
6 months ago by ATpoint 86k
2
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1
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486
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Answer: Answer: Trying to use equivalence test from a diffbind dataset
6 months ago by ATpoint 86k
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0
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463
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Answer: Answer: How to extract gene_counts_length_scaled matrix from either raw count matrix or
6 months ago by ATpoint 86k
1
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0
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608
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Comment: Comment: PCR duplicate removal in single-end atac-seq data
6 months ago by ATpoint 86k
0
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0
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666
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Comment: Comment: Removing batch effect and doing differential gene expression analysis
6 months ago by ATpoint 86k
2
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1
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608
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Answer: Answer: PCR duplicate removal in single-end atac-seq data
6 months ago by ATpoint 86k
2
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1
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759
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Comment: Comment: RSEM getting TPM from STAR alignment
6 months ago by ATpoint 86k
0
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0
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525
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Comment: Comment: In silico PCR - multiple Primers and multiple sequences at the same time
6 months ago by ATpoint 86k
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0
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1.1k
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Comment: Comment: Salmon ~ Effective Length
6 months ago by ATpoint 86k
1
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1
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391
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Answer: Answer: scaling for kallisto estimate counts
6 months ago by ATpoint 86k
0
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0
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710
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Comment: Comment: Best way to create a custom reference for CellRanger when using a transgenic mou
6 months ago by ATpoint 86k
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1
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372
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Comment: Comment: Determining biological relevance of a list of motifs?
6 months ago by ATpoint 86k
2
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0
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710
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Comment: Comment: Best way to create a custom reference for CellRanger when using a transgenic mou
6 months ago by ATpoint 86k
0
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1
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710
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Comment: Comment: Best way to create a custom reference for CellRanger when using a transgenic mou
6 months ago by ATpoint 86k
0
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1
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679
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
updated 6 months ago by 44k • written 6 months ago by 86k
0
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0
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286
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Comment: Comment: Best kit for PacBio HiFi Sequencing preperation
6 months ago by ATpoint 86k
2
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1
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836
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Answer: Answer: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
6 months ago by ATpoint 86k
1
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0
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590
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Comment: Comment: Normalization of samples with very different transcriptomic profiles
6 months ago by ATpoint 86k
0
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0
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669
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Comment: Comment: How to know protomter position in the chromosome?
6 months ago by ATpoint 86k
0
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1
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669
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Comment: Comment: How to know protomter position in the chromosome?
6 months ago by ATpoint 86k
0
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1
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592
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Comment: Comment: Test custom signature using GSEA in scRNA-seq
6 months ago by ATpoint 86k
5
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1
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590
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Answer: Answer: Normalization of samples with very different transcriptomic profiles
6 months ago by ATpoint 86k
0
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1
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592
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Answer: Answer: Test custom signature using GSEA in scRNA-seq
6 months ago by ATpoint 86k
1
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0
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733
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Comment: Comment: Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
6 months ago by ATpoint 86k
0
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1
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810
views
Comment: Comment: How do I update the gene names of TCGA data correctly?
6 months ago by ATpoint 86k
1
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0
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1.1k
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Answer: Answer: Non-symmetric shrinkage with apeglm?
6 months ago by ATpoint 86k
0
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2
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986
views
Answer: Answer: I am trying to get my head around amplicon sequencing library prep but can't und
updated 6 months ago by 44k • written 6 months ago by 86k
0
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1
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810
views
Answer: Answer: How do I update the gene names of TCGA data correctly?
6 months ago by ATpoint 86k
0
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0
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413
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Answer: Answer: Atac seq Annotation
6 months ago by ATpoint 86k
0
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0
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1.1k
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Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
6 months ago by ATpoint 86k
0
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1
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5.7k
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Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
6 months ago by ATpoint 86k
1
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0
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282
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Comment: Comment: Mass spectrometry data analysis
6 months ago by ATpoint 86k
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0
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1.1k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
6 months ago by ATpoint 86k
10,074 results • Page 6 of 202
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