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Comment: Comment: Mageck RRA is listing negative controls as high fold change in the gene summary
6 months ago by ATpoint 86k
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1.1k
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Answer: Answer: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
6 months ago by ATpoint 86k
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1.1k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
6 months ago by ATpoint 86k
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669
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Comment: Comment: Removing batch effect and doing differential gene expression analysis
6 months ago by ATpoint 86k
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366
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Comment: Comment: After DimHeatmap no histogram values
6 months ago by ATpoint 86k
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474
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
6 months ago by ATpoint 86k
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474
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
6 months ago by ATpoint 86k
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1.1k
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Comment: Comment: How to do a PCA plot on the exome data using different library kits?
6 months ago by ATpoint 86k
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874
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Comment: Comment: Are there different ways of calculating log2FC?/How do I manually calculate gene
6 months ago by ATpoint 86k
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778
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
6 months ago by ATpoint 86k
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438
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Comment: Comment: Batch correction prior to running DESEQ2
6 months ago by ATpoint 86k
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1
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666
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Comment: Comment: QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
6 months ago by ATpoint 86k
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1
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874
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Comment: Comment: Are there different ways of calculating log2FC?/How do I manually calculate gene
6 months ago by ATpoint 86k
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1.2k
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Answer: Answer: RNA-seq differentially expressed genes (DEGs) with low fold change values
6 months ago by ATpoint 86k
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481
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Comment: Comment: Cut&Run replicates handling
6 months ago by ATpoint 86k
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1
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533
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Answer: Answer: cannot conda install macs3 on linux
6 months ago by ATpoint 86k
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306
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Answer: Answer: Chromosomal distribution of the trancscripts count
6 months ago by ATpoint 86k
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1
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1.1k
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Comment: Comment: How do i calculate the mean of triplicates in a data.frame based on pattern?
6 months ago by ATpoint 86k
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1
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1.1k
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Comment: Comment: How do i calculate the mean of triplicates in a data.frame based on pattern?
6 months ago by ATpoint 86k
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1.3k
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Answer: Answer: help in changing Y scale in R
6 months ago by ATpoint 86k
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0
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1.1k
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Comment: Comment: Z score
6 months ago by ATpoint 86k
2
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1
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511
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Comment: Comment: Is there any minimum number of counts in scRNAseq to consider that a gene is exp
6 months ago by ATpoint 86k
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1
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6.3k
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Comment: Comment: txt file to bigwig
6 months ago by ATpoint 86k
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1
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786
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Comment: Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
6 months ago by ATpoint 86k
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458
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Comment: Comment: How to decrease the motif score?
6 months ago by ATpoint 86k
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0
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519
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Comment: Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
7 months ago by ATpoint 86k
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609
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Comment: Comment: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
7 months ago by ATpoint 86k
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2
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609
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Answer: Answer: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
7 months ago by ATpoint 86k
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0
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706
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Comment: Comment: What is a good way to do gene differentials in single cell data where one group
7 months ago by ATpoint 86k
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1
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1.9k
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Answer: Answer: ComplexHeatmap - How to change fontsize of rowAnnotation
7 months ago by ATpoint 86k
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0
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706
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Comment: Comment: What is a good way to do gene differentials in single cell data where one group
7 months ago by ATpoint 86k
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1
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1.1k
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Comment: Comment: Mouse or Rat Gene Expression Data Similar to GTEx
7 months ago by ATpoint 86k
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1
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2.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
7 months ago by ATpoint 86k
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1
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733
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Comment: Comment: Error with BiocParallel. No barcodes files found
7 months ago by ATpoint 86k
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1
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546
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Comment: Comment: Unexpected read length from NGS
7 months ago by ATpoint 86k
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1
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733
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Answer: Answer: Error with BiocParallel. No barcodes files found
7 months ago by ATpoint 86k
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0
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381
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Comment: Comment: How to interpret this plotMDS of three disease clusters?
7 months ago by ATpoint 86k
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1
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2.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
7 months ago by ATpoint 86k
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1
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1.1k
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Comment: Comment: Z score
7 months ago by ATpoint 86k
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2
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1.1k
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Answer: Answer: Z score
7 months ago by ATpoint 86k
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2
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2.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
7 months ago by ATpoint 86k
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706
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Comment: Comment: from CRAM to fastq
7 months ago by ATpoint 86k
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1
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706
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Comment: Comment: from CRAM to fastq
7 months ago by ATpoint 86k
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271
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Comment: Comment: No output when converting transcript IDs to gene symbols
7 months ago by ATpoint 86k
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0
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693
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Comment: Comment: How do we do quantification using stringtie merge option for all the merged samp
7 months ago by ATpoint 86k
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302
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Comment: Comment: Mapping difference with BWA
7 months ago by ATpoint 86k
1
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1
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815
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Comment: Comment: Problem in getting geo file through GEOQUERY
7 months ago by ATpoint 86k
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1
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815
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Answer: Answer: Problem in getting geo file through GEOQUERY
7 months ago by ATpoint 86k
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1
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615
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Comment: Comment: Why most genes have high padj values
7 months ago by ATpoint 86k
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2
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687
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Comment: Comment: Functional enrichment analysis for unique gene IDs
7 months ago by ATpoint 86k
10,074 results • Page 7 of 202
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