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Answer: Answer: Can I perform a correlation test with 3 biological replicates per condition?
2 days ago by ATpoint 82k
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Answer: Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
3 days ago by ATpoint 82k
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231
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Answer: Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
4 days ago by ATpoint 82k
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455
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Answer: Answer: Overlapping Ranges within Granges object
4 days ago by ATpoint 82k
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229
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Answer: Answer: Inquiry about deseq2 transformation
5 days ago by ATpoint 82k
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176
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Answer: Answer: The total expressed genes in RNA-Seq data
5 days ago by ATpoint 82k
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133
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Answer: Answer: What is the bin size for Bamcompare?
5 days ago by ATpoint 82k
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291
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Answer: Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
7 days ago by ATpoint 82k
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223
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Answer: Answer: DESeq2 error
9 days ago by ATpoint 82k
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340
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Answer: Answer: How to convert normalized BigWig file to count matrix?
9 days ago by ATpoint 82k
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230
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Answer: Answer: How do I change the title font size in ViolinPlot (Seurat)
11 days ago by ATpoint 82k
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335
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Answer: Answer: A question about reference genome for creating the consensus sequence
11 days ago by ATpoint 82k
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189
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Answer: Answer: What is the proper way to identify the cell types of scRNAseq cluster?
12 days ago by ATpoint 82k
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594
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Answer: Answer: Tissue-specific DEG analysis with DEseq2
13 days ago by ATpoint 82k
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378
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Answer: Answer: install.packages("imudata")
13 days ago by ATpoint 82k
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271
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Answer: Answer: Analysis of intronic reads included scRNA-seq data
16 days ago by ATpoint 82k
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207
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Answer: Answer: DSEQ2 analysis
16 days ago by ATpoint 82k
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383
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Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
16 days ago by ATpoint 82k
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225
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Answer: Answer: MA plot of shrunken fold change
19 days ago by ATpoint 82k
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960
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Answer: Answer: High Malat-1 expression in single cell data
19 days ago by ATpoint 82k
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350
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Answer: Answer: ChIP-seq datasets: input samples omitted?
20 days ago by ATpoint 82k
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445
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
22 days ago by ATpoint 82k
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371
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Answer: Answer: Sequence read length shorter than flow cell specification
23 days ago by ATpoint 82k
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330
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
26 days ago by ATpoint 82k
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417
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
27 days ago by ATpoint 82k
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357
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Answer: Answer: Per base sequence content error in RNAseq analysis
27 days ago by ATpoint 82k
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625
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
28 days ago by ATpoint 82k
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313
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Answer: Answer: DEseq2
4 weeks ago by ATpoint 82k
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430
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Answer: Answer: Which experiments generate Position Frequency Matrix?
4 weeks ago by ATpoint 82k
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435
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
4 weeks ago by ATpoint 82k
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401
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
4 weeks ago by ATpoint 82k
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459
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Answer: Answer: Deseq2 : Paired analysis or otherwise
5 weeks ago by ATpoint 82k
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288
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
5 weeks ago by ATpoint 82k
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201
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
5 weeks ago by ATpoint 82k
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253
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Answer: Answer: TMM normalization with DESeq2
updated 6 weeks ago by 43k • written 6 weeks ago by 82k
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218
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Answer: Answer: Can't download txdbmaker package
6 weeks ago by ATpoint 82k
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406
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Answer: Answer: Homer giving troubles
7 weeks ago by ATpoint 82k
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321
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Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
7 weeks ago by ATpoint 82k
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285
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Answer: Answer: How to calculate depth of coverage and applying read depth filter
7 weeks ago by ATpoint 82k
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449
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Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by ATpoint 82k
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440
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Answer: Answer: Limma compare between 3 conditions vs 2 conditions
7 weeks ago by ATpoint 82k
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273
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Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
7 weeks ago by ATpoint 82k
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247
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Answer: Answer: Can I use this community for software development?
7 weeks ago by ATpoint 82k
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606
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Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
8 weeks ago by ATpoint 82k
2
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318
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Answer: Answer: How to visualize scRNA-seq normalized data
8 weeks ago by ATpoint 82k
2
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274
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Answer: Answer: Infering the cell composition from bulk RNA-seq data for mouse
8 weeks ago by ATpoint 82k
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252
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Answer: Answer: Gene set to perform GSVA
8 weeks ago by ATpoint 82k
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337
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Answer: Answer: Length by gene from salmon
8 weeks ago by ATpoint 82k
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424
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Answer: Answer: scRNAseq normalization
8 weeks ago by ATpoint 82k
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304
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Answer: Answer: Compute p-value, having log fold change
9 weeks ago by ATpoint 82k
2,328 results • Page 1 of 47
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