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323
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Comment: Comment: Does comparing two different groups to a common third group introduce bias in th
16 days ago by ATpoint 82k
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357
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
16 days ago by ATpoint 82k
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384
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Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
16 days ago by ATpoint 82k
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357
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
17 days ago by ATpoint 82k
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296
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Comment: Comment: Odd alignment question/finding
17 days ago by ATpoint 82k
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362
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Comment: Comment: DESeq2 processing problems
17 days ago by ATpoint 82k
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225
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Answer: Answer: MA plot of shrunken fold change
19 days ago by ATpoint 82k
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963
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Answer: Answer: High Malat-1 expression in single cell data
20 days ago by ATpoint 82k
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202
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Comment: Comment: Longitudinal analysis of subpopulations: which approach is better?
20 days ago by ATpoint 82k
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384
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Comment: Comment: How to assign cell types after integration in scRNA
20 days ago by ATpoint 82k
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350
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Answer: Answer: ChIP-seq datasets: input samples omitted?
20 days ago by ATpoint 82k
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384
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Comment: Comment: How to assign cell types after integration in scRNA
21 days ago by ATpoint 82k
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
21 days ago by ATpoint 82k
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445
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
22 days ago by ATpoint 82k
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0
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454
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Comment: Comment: PCA plot
23 days ago by ATpoint 82k
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3.8k
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Comment: Comment: Treatment VS Control in Single Cell RNAseq analysis
23 days ago by ATpoint 82k
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269
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Comment: Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
23 days ago by ATpoint 82k
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371
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Answer: Answer: Sequence read length shorter than flow cell specification
23 days ago by ATpoint 82k
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423
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Comment: Comment: Highest variable features in single cell data
24 days ago by ATpoint 82k
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616
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Comment: Comment: To get p-values for the TPM
25 days ago by ATpoint 82k
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417
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Comment: Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
25 days ago by ATpoint 82k
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433
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
25 days ago by ATpoint 82k
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330
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
26 days ago by ATpoint 82k
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167
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Comment: Comment: Displaced fragment length distribution in ATAC-seq
26 days ago by ATpoint 82k
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358
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Comment: Comment: Per base sequence content error in RNAseq analysis
27 days ago by ATpoint 82k
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417
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
27 days ago by ATpoint 82k
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1
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358
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Answer: Answer: Per base sequence content error in RNAseq analysis
27 days ago by ATpoint 82k
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625
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
28 days ago by ATpoint 82k
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2.0k
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Comment: Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
28 days ago by ATpoint 82k
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1.4k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
29 days ago by ATpoint 82k
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326
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Comment: Comment: Could you please assist in identifying this cluster?
29 days ago by ATpoint 82k
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5.3k
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Comment: Comment: Memory usage of picard Samsort
29 days ago by ATpoint 82k
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313
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Answer: Answer: DEseq2
4 weeks ago by ATpoint 82k
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0
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577
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
4 weeks ago by ATpoint 82k
2
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364
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Comment: Comment: Bwa sampe - BGI
4 weeks ago by ATpoint 82k
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431
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Comment: Comment: Ensembl gene id conversion
4 weeks ago by ATpoint 82k
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430
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Answer: Answer: Which experiments generate Position Frequency Matrix?
4 weeks ago by ATpoint 82k
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1
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315
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Comment: Comment: Statistical Advice Needed for RNAseq Data Analysis
4 weeks ago by ATpoint 82k
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322
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
4 weeks ago by ATpoint 82k
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0
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254
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Comment: Comment: Error in edgeR/Deseq2 Analysis
4 weeks ago by ATpoint 82k
2
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436
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
4 weeks ago by ATpoint 82k
3
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2
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401
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
4 weeks ago by ATpoint 82k
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0
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459
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Comment: Comment: Deseq2 : Paired analysis or otherwise
4 weeks ago by ATpoint 82k
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1
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24k
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Comment: Comment: Gene Set Enrichment Analysis
5 weeks ago by ATpoint 82k
1
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1
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459
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Answer: Answer: Deseq2 : Paired analysis or otherwise
5 weeks ago by ATpoint 82k
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0
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393
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Comment: Comment: 10x GEX and ADT data analysis in Seurat
5 weeks ago by ATpoint 82k
1
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0
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288
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
5 weeks ago by ATpoint 82k
1
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0
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308
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Comment: Comment: DepMap: siRNA and CRSIPR discrepancy
5 weeks ago by ATpoint 82k
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1
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370
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Comment: Comment: Questions about transfering wgs file to reference genome file
5 weeks ago by ATpoint 82k
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1.0k
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Comment: Comment: RNAseq of primary tumor and metastases in two different organ
5 weeks ago by ATpoint 82k
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