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637
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Re-evaluating SAM/BAM bitflags after modifying the file
alignment
4.1 years ago by Antonio Camargo ▴ 160
0
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0
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4.1k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
4.1 years ago by Antonio Camargo ▴ 160
0
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0
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4.1k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
5.0 years ago by Antonio Camargo ▴ 160
2
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0
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4.1k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
5.0 years ago by Antonio Camargo ▴ 160
0
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0
replies
4.1k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
5.0 years ago by Antonio Camargo ▴ 160
5
votes
7
replies
4.1k
views
Bowtie2 and BWA-MEM giving very different results in metagenomic data
metagenomics bwa bowtie genomics alignment
5.0 years ago by Antonio Camargo ▴ 160
1
vote
0
replies
914
views
Comment: C: RNA-Seq quantification of a heterozygous individual with a short deletion
5.1 years ago by Antonio Camargo ▴ 160
3
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2
replies
914
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RNA-Seq quantification of a heterozygous individual with a short deletion
RNA-Seq
updated 5.1 years ago by ▴ 700 • written 5.1 years ago by ▴ 160
1
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1
reply
2.3k
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Comment: C: Can I filter mRNA from bulk RNA-seq reads?
5.1 years ago by Antonio Camargo ▴ 160
1
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2
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2.3k
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Comment: A: Can I filter mRNA from bulk RNA-seq reads?
5.1 years ago by Antonio Camargo ▴ 160
0
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0
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1.4k
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Comment: C: Is it possible to detect lncRNA in a de novo assembled genome?
5.2 years ago by Antonio Camargo ▴ 160
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0
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2.2k
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Answer: A: Currently what is the best tool for long non-coding RNA annotation? Is FEELnc a
5.2 years ago by Antonio Camargo ▴ 160
1
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0
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1.7k
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Answer: A: How to extract lncRNA from CPC2 output?
5.2 years ago by Antonio Camargo ▴ 160
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0
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2.4k
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Answer: A: Software and algorithm for identification of tissue-specific express genes
5.5 years ago by Antonio Camargo ▴ 160
0
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0
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4.9k
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Comment: C: How to calculate "Tissue specificity score" using JSD
5.5 years ago by Antonio Camargo ▴ 160
1
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1
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4.9k
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Answer: A: How to calculate "Tissue specificity score" using JSD
5.5 years ago by Antonio Camargo ▴ 160
1
vote
3
replies
2.2k
views
Transforming stranded RNA-Seq libraries in unstranded
rna-seq stranded
updated 6.4 years ago by 20 • written 8.6 years ago by ▴ 160
0
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1
reply
1.5k
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Comment: C: How should a query a gene type in multiple genomes?
6.6 years ago by Antonio Camargo ▴ 160
0
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1
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1.5k
views
Comment: C: How should a query a gene type in multiple genomes?
6.6 years ago by Antonio Camargo ▴ 160
2
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6
replies
1.5k
views
How should a query a gene type in multiple genomes?
query search
updated 6.6 years ago by 147k • written 6.6 years ago by ▴ 160
0
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4
replies
4.1k
views
Insert size in RNA-Seq library
rna-seq
updated 7.2 years ago by ▴ 190 • written 8.6 years ago by ▴ 160
1
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7
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3.0k
views
Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth RNA-Seq differential-expression
7.2 years ago by Antonio Camargo ▴ 160
1
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0
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3.0k
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Answer: A: Transcripts with beta close to zero are considered differentially expressed in a
7.2 years ago by Antonio Camargo ▴ 160
0
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0
replies
3.8k
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Comment: C: Microbial diversity analysis using whole-genome metagenomic data
7.3 years ago by Antonio Camargo ▴ 160
3
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7
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3.8k
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Microbial diversity analysis using whole-genome metagenomic data
metagenome taxonomy mothur qiime
updated 7.3 years ago by 20k • written 7.3 years ago by ▴ 160
0
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0
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3.8k
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Comment: C: Microbial diversity analysis using whole-genome metagenomic data
7.3 years ago by Antonio Camargo ▴ 160
0
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0
replies
3.0k
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Comment: C: Transcripts with beta close to zero are considered differentially expressed in a
7.3 years ago by Antonio Camargo ▴ 160
0
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1
reply
3.0k
views
Comment: C: Transcripts with beta close to zero are considered differentially expressed in a
7.3 years ago by Antonio Camargo ▴ 160
0
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1
reply
3.0k
views
Comment: C: Transcripts with beta close to zero are considered differentially expressed in a
7.3 years ago by Antonio Camargo ▴ 160
20
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9
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13k
views
7 follow
How to create 'gene' and 'transcript' entries in a GTF containing only exons
cufflinks gtf
updated 7.4 years ago by ▴ 80 • written 8.0 years ago by ▴ 160
3
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1
reply
1.6k
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DE analysis of low-expression transcripts
RNA-Seq expression deseq2 edgeR sleuth
updated 7.9 years ago by 104k • written 7.9 years ago by ▴ 160
0
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0
replies
1.5k
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Using Stitch MAF blocks withou Galaxy
maf stitch galaxy
8.1 years ago by Antonio Camargo ▴ 160
0
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0
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1.8k
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Comment: C: Cufflinks displaying "WARNING: Multi-Hit not found"
8.1 years ago by Antonio Camargo ▴ 160
1
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2
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1.8k
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Cufflinks displaying "WARNING: Multi-Hit not found"
multi-hit warning cufflinks rna-seq
8.5 years ago by Antonio Camargo ▴ 160
0
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0
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2.2k
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Comment: C: Transforming stranded RNA-Seq libraries in unstranded
8.6 years ago by Antonio Camargo ▴ 160
0
votes
0
replies
4.1k
views
Comment: C: Insert size in RNA-Seq library
8.6 years ago by Antonio Camargo ▴ 160
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