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7
votes
9
replies
6.3k
views
Merge contigs in fasta file
fasta merge contigs
updated 3.2 years ago by ▴ 10 • written 5.5 years ago by ▴ 350
1
vote
0
replies
1.0k
views
Comment: C: Variation in proportion of methylated CpGs between human cell types
4.3 years ago by Rubal ▴ 350
1
vote
1
reply
1.0k
views
Comment: C: Variation in proportion of methylated CpGs between human cell types
4.4 years ago by Rubal ▴ 350
4
votes
4
replies
1.0k
views
Variation in proportion of methylated CpGs between human cell types
methylation cpgs genome epigenetics cell
updated 4.4 years ago by ▴ 180 • written 4.4 years ago by ▴ 350
0
votes
0
replies
911
views
Make a bed file to exclude 1Mb from start and end of contigs
genome filter bed mask
updated 4.5 years ago by 20 • written 4.7 years ago by ▴ 350
0
votes
0
replies
1.9k
views
Comment: C: How to create a bed file from a fasta containing all regions with clusters of >=
4.7 years ago by Rubal ▴ 350
0
votes
1
reply
1.9k
views
Comment: C: How to create a bed file from a fasta containing all regions with clusters of >=
4.7 years ago by Rubal ▴ 350
0
votes
1
reply
1.9k
views
Comment: C: How to create a bed file from a fasta containing all regions with clusters of >=
4.7 years ago by Rubal ▴ 350
2
votes
5
replies
1.9k
views
How to create a bed file from a fasta containing all regions with clusters of >= 50 Ns and flanking 1kb regions
genome filtering bed fasta
updated 4.7 years ago by 85k • written 4.7 years ago by ▴ 350
1
vote
0
replies
1.3k
views
Comment: C: Find mutations that are spatially clustered?
4.7 years ago by Rubal ▴ 350
0
votes
1
reply
1.3k
views
Comment: C: Find mutations that are spatially clustered?
4.7 years ago by Rubal ▴ 350
0
votes
1
reply
1.3k
views
Comment: C: Find mutations that are spatially clustered?
4.7 years ago by Rubal ▴ 350
4
votes
6
replies
1.3k
views
Find mutations that are spatially clustered?
genome variants clustering GRanges
updated 4.7 years ago by ★ 3.4k • written 4.7 years ago by ▴ 350
1
vote
3
replies
7.4k
views
Plotting chromosomal data from sliding window analyses
visualisation plotting ngs R genome
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 350
1
vote
0
replies
2.4k
views
Comment: C: How to generate rainfall plots when using multiple different species assemblies
4.7 years ago by Rubal ▴ 350
3
votes
2
replies
2.4k
views
How to generate rainfall plots when using multiple different species assemblies
genomics visualization fasta snps
updated 4.7 years ago by ★ 3.4k • written 4.7 years ago by ▴ 350
0
votes
0
replies
4.7k
views
Comment: C: Interpreting XPEHH output
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 350
0
votes
1
reply
4.7k
views
Comment: C: Interpreting XPEHH output
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 350
0
votes
0
replies
1.9k
views
Comment: C: Modify reference fasta using bed file
5.1 years ago by Rubal ▴ 350
0
votes
0
replies
1.5k
views
Comment: C: Calculating effective coverage/callable genome for variant calling from a bam fi
5.3 years ago by Rubal ▴ 350
1
vote
2
replies
1.5k
views
Calculating effective coverage/callable genome for variant calling from a bam file
genome bam bigwig coverage variant-calling
updated 5.3 years ago by 164k • written 5.3 years ago by ▴ 350
3
votes
2
replies
1.9k
views
Modify reference fasta using bed file
fasta bed genome
updated 5.4 years ago by ★ 2.2k • written 5.4 years ago by ▴ 350
1
vote
0
replies
1.0k
views
Comment: C: How to find total size of regions NOT in bigWig file
updated 5.5 years ago by 85k • written 5.5 years ago by ▴ 350
5
votes
2
replies
1.0k
views
How to find total size of regions NOT in bigWig file
fasta bed genome
updated 5.5 years ago by 85k • written 5.5 years ago by ▴ 350
0
votes
0
replies
6.3k
views
Comment: C: Merge contigs in fasta file
5.5 years ago by Rubal ▴ 350
0
votes
1
reply
6.3k
views
Comment: C: Merge contigs in fasta file
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 350
0
votes
0
replies
3.7k
views
Comment: C: VCF input for KaryotypeR
6.1 years ago by Rubal ▴ 350
4
votes
11
replies
3.7k
views
VCF input for KaryotypeR
R
updated 6.1 years ago by 5.8k • written 6.1 years ago by ▴ 350
0
votes
0
replies
3.7k
views
Comment: C: VCF input for KaryotypeR
6.1 years ago by Rubal ▴ 350
0
votes
0
replies
3.7k
views
Comment: C: VCF input for KaryotypeR
6.1 years ago by Rubal ▴ 350
0
votes
1
reply
3.7k
views
Comment: C: VCF input for KaryotypeR
6.1 years ago by Rubal ▴ 350
0
votes
0
replies
3.7k
views
Comment: C: VCF input for KaryotypeR
6.1 years ago by Rubal ▴ 350
1
vote
1
reply
1.5k
views
Calculate Mean absolute allele frequency difference from MS output
ms simulations allele frequency
6.8 years ago by Rubal ▴ 350
0
votes
0
replies
1.8k
views
Comment: C: Are there tools to visually model/simulate the spread of a mutant cell populatio
8.1 years ago by Rubal ▴ 350
2
votes
2
replies
1.8k
views
Are there tools to visually model/simulate the spread of a mutant cell population in 2D?
simulations cells
updated 8.1 years ago by 27k • written 8.1 years ago by ▴ 350
0
votes
0
replies
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: Calculating statistical significance of overlap between two groups of genes - ad
8.2 years ago by Rubal ▴ 350
3
votes
11
replies
7.0k
views
Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
r genome genes overlap significance
updated 8.2 years ago by 11k • written 8.2 years ago by ▴ 350
2
votes
5
replies
3.7k
views
How to get per sample read depth from VCF with no DP field
vcf coverage depth
updated 8.4 years ago by ★ 2.5k • written 8.4 years ago by ▴ 350
0
votes
0
replies
3.7k
views
Comment: C: How to get per sample read depth from VCF with no DP field
8.4 years ago by Rubal ▴ 350
0
votes
0
replies
2.9k
views
Comment: C: Identifying which allele is derived in non-human species
8.8 years ago by Rubal ▴ 350
0
votes
1
reply
2.9k
views
Comment: C: Identifying which allele is derived in non-human species
8.8 years ago by Rubal ▴ 350
0
votes
1
reply
2.9k
views
Comment: C: Identifying which allele is derived in non-human species
8.8 years ago by Rubal ▴ 350
2
votes
5
replies
2.9k
views
Identifying which allele is derived in non-human species
BioMart ancestral SNPs derived Ensembl
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 350
2
votes
1
reply
3.0k
views
Calculating Fst from simulations
Fst Simulations Coalescent Population genetics
9.1 years ago by Rubal ▴ 350
102 results • Page 1 of 3
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