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Answer: A: differential gene expression analysis
6.6 years ago by ATCG ▴ 400
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3.1k
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Comment: A: differential gene expression analysis
6.6 years ago by ATCG ▴ 400
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3.1k
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Comment: A: differential gene expression analysis
6.6 years ago by ATCG ▴ 400
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number of individuals in each genotype group for a particular SNP
plink SNP
updated 6.8 years ago by 20 • written 6.8 years ago by ▴ 400
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1.5k
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missing a sample and individual attributes in GTEX Adipose- Subcutaneous(v7)
RNA-Seq GTEx Adipose
6.8 years ago by ATCG ▴ 400
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Comment: Comment: Working with GTEX dataset
updated 23 months ago by 44k • written 6.8 years ago by ▴ 400
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Answer: A: remove lowly expressed genes by selecting genes that had FPKM > 0
6.8 years ago by ATCG ▴ 400
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remove lowly expressed genes by selecting genes that had FPKM > 0
RNA-Seq filter
6.8 years ago by ATCG ▴ 400
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Comment: C: Subsetting individuals with Plink. Error: Line 1 of --keep file has fewer tokens
6.8 years ago by ATCG ▴ 400
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Comment: A: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format
6.8 years ago by ATCG ▴ 400
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format
6.8 years ago by ATCG ▴ 400
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29k
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Comment: A: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format
6.8 years ago by ATCG ▴ 400
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1
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2.2k
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PCA from genotype data using the --pca option in plink2
pca plink2 LD pruning PCA
6.9 years ago by ATCG ▴ 400
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Comment: C: extract a chromosome region from vcf.c1.GRU.tar
6.9 years ago by ATCG ▴ 400
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1.9k
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extract a chromosome region from vcf.c1.GRU.tar
vcf .tar
6.9 years ago by ATCG ▴ 400
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Comment: C: available subcutaneous adipose RNA-seq
6.9 years ago by ATCG ▴ 400
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1.4k
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available subcutaneous adipose RNA-seq
RNA-Seq Subcutaneous adipose
updated 6.9 years ago by ★ 4.1k • written 6.9 years ago by ▴ 400
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Comment: C: Indexing human reference genome before STAR Mapping
6.9 years ago by ATCG ▴ 400
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bash loop to align 366 RNAseq samples in individual folders
RNA-Seq Bash Unix STAR alignment
6.9 years ago by ATCG ▴ 400
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5.5k
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Answer: A: Align Sequentially All Files In A Protein Directory
6.9 years ago by ATCG ▴ 400
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1
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4.2k
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Comment: A: filter out related individuals from a vcf file using Plink or Hail
7.0 years ago by ATCG ▴ 400
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6.4k
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Comment: C: FastQTL - GNU Scientific Library (GSL) Domain Error
7.1 years ago by ATCG ▴ 400
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6.4k
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Answer: A: FastQTL - GNU Scientific Library (GSL) Domain Error
7.1 years ago by ATCG ▴ 400
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6.4k
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Comment: C: FastQTL - GNU Scientific Library (GSL) Domain Error
7.1 years ago by ATCG ▴ 400
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11k
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Comment: A: Vcflib Documentation
7.1 years ago by ATCG ▴ 400
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2.6k
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Comment: C: vcf file filter
7.1 years ago by ATCG ▴ 400
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1
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6.4k
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Comment: C: FastQTL - GNU Scientific Library (GSL) Domain Error
7.1 years ago by ATCG ▴ 400
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3
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2.6k
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vcf file filter
filter vcf SNPs minor allele homozygotes
updated 7.1 years ago by 164k • written 7.1 years ago by ▴ 400
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52k
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Comment: A: Filtering Vcf File
7.1 years ago by ATCG ▴ 400
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1
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6.4k
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Comment: C: FastQTL - GNU Scientific Library (GSL) Domain Error
7.1 years ago by ATCG ▴ 400
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7.5k
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Answer: A: What is the best way to quantile normalize expression matrix ?
7.1 years ago by ATCG ▴ 400
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1
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6.4k
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Answer: A: FastQTL - GNU Scientific Library (GSL) Domain Error
updated 7.2 years ago by 47k • written 7.2 years ago by ▴ 400
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1
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2.2k
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FastQTL-Finding a candidate QTL per phenotype
FastQTL
7.2 years ago by ATCG ▴ 400
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veqtl-mapper in a replication study --perm option
veqtl-mapper permutations replication LD
7.2 years ago by ATCG ▴ 400
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0
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8.3k
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Comment: Comment: How to solve the problem when I get error message "column 1 is not a genotype ob
7.2 years ago by ATCG ▴ 400
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27k
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Comment: Comment: Readvcf In R
updated 3.1 years ago by 44k • written 7.2 years ago by ▴ 400
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27k
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Comment: Comment: Readvcf In R
updated 3.1 years ago by 44k • written 7.2 years ago by ▴ 400
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0
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10k
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Answer: A: ld matrix in plink
7.2 years ago by ATCG ▴ 400
4
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38k
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Answer: A: What Does Genetype ("0/0", "0/1" Or "1/1") In *.Vcf File Represent?
7.2 years ago by ATCG ▴ 400
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Answer: Answer: What Does Genetype ("0/0", "0/1" Or "1/1") In *.Vcf File Represent?
updated 3.1 years ago by 12k • written 7.2 years ago by ▴ 400
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29k
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Comment: C: Produce PCA for 1000 Genomes Phase III in VCF format
7.2 years ago by ATCG ▴ 400
1
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1
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29k
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Comment: A: Produce PCA for 1000 Genomes Phase III in VCF format
7.2 years ago by ATCG ▴ 400
2
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0
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39k
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Answer: Answer: Create VCF file from .bim, .fam and .bed file
updated 3.0 years ago by 44k • written 7.2 years ago by ▴ 400
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1
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5.7k
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Comment: C: How to combine expression values of multiple probes for one gene?
7.4 years ago by ATCG ▴ 400
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1
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1.8k
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sea corrected expression matrix
sva microarrays batch-effect
updated 7 months ago by 44k • written 7.4 years ago by ▴ 400
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7.9k
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Comment: C: plink 1.9 Principal Component Analysis
7.4 years ago by ATCG ▴ 400
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0
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9.9k
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Comment: C: pca in eigenstrat
7.4 years ago by ATCG ▴ 400
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12k
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Comment: C: WGCNA package in R: dendogram plot error
7.5 years ago by ATCG ▴ 400
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0
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1.8k
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Comment: C: sequencing QC metrics from kallisto
7.6 years ago by ATCG ▴ 400
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1
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1.8k
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sequencing QC metrics from kallisto
kallisto
7.6 years ago by ATCG ▴ 400
167 results • Page 3 of 4
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