Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
27
votes
9
replies
39k
views
7 follow
How To Extract Set Of Reads From Fastq (Or Eventually Fasta And Qual) Based On List Of Ids?
extraction read 454 fastq fasta
updated 3 months ago by 147k • written 12.5 years ago by 3.2k
7
votes
9
replies
4.4k
views
lowercase fasta coordinates to GFF
lowercase fasta GFF
updated 2.5 years ago by 44k • written 9.7 years ago by 3.2k
0
votes
0
replies
3.0k
views
Comment: C: Convert Phred score 41 to 40
updated 4.9 years ago by 44k • written 10.4 years ago by 3.2k
0
votes
0
replies
8.0k
views
Comment: C: Why is DNA split into many fragments before being sequenced by an Illumina seque
updated 4.9 years ago by 44k • written 10.5 years ago by 3.2k
0
votes
1
reply
2.3k
views
Comment: C: Split merged BAM file
updated 4.9 years ago by 44k • written 10.5 years ago by 3.2k
0
votes
0
replies
3.7k
views
Comment: C: First thing to do when you receive your sequenced genome of interest.
updated 4.9 years ago by 44k • written 10.5 years ago by 3.2k
2
votes
1
reply
9.7k
views
Answer: A: Too late to switch to Bioinformatics?
updated 4.9 years ago by 44k • written 10.5 years ago by 3.2k
0
votes
1
reply
3.7k
views
Answer: A: Generating Read Length?
updated 4.9 years ago by 44k • written 8.8 years ago by 3.2k
0
votes
1
reply
6.9k
views
Comment: C: What is ref sequence name in BAM file header ?
updated 4.9 years ago by 44k • written 9.5 years ago by 3.2k
0
votes
1
reply
7.1k
views
Answer: A: Illumina Mate Pair Read Duplication Level
updated 4.9 years ago by 44k • written 11.1 years ago by 3.2k
1
vote
1
reply
3.0k
views
Comment: C: Running Galaxy tools locally using bx-python
updated 4.9 years ago by 44k • written 8.9 years ago by 3.2k
2
votes
0
replies
2.5k
views
Answer: A: Identifying distance between mate pairs
updated 4.9 years ago by 44k • written 9.0 years ago by 3.2k
1
vote
1
reply
6.9k
views
Comment: C: How to check whether a genome is circular
updated 5.0 years ago by 44k • written 9.0 years ago by 3.2k
1
vote
1
reply
3.2k
views
Comment: C: Bioinformatics job to start.
updated 5.0 years ago by 44k • written 9.0 years ago by 3.2k
0
votes
1
reply
3.5k
views
Comment: C: Where to download human alpha satellite from centromeric regions
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
1
reply
1.8k
views
Comment: C: evaluation distance in Eukaryotic
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
1
reply
2.9k
views
Comment: C: contigs alignment with long reads
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
1
reply
2.9k
views
Comment: C: contigs alignment with long reads
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
1
reply
5.7k
views
Comment: C: reverse complement in Assembly!
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
1
reply
5.7k
views
Answer: A: reverse complement in Assembly!
updated 5.0 years ago by 44k • written 9.1 years ago by 3.2k
0
votes
0
replies
1.5k
views
identify length of repeat arrays with given motif
repeat trf length
updated 5.0 years ago by 20 • written 8.0 years ago by 3.2k
1
vote
1
reply
6.0k
views
Answer: A: Remove or mask repeat regions from .fasta file
updated 5.1 years ago by 44k • written 9.5 years ago by 3.2k
1
vote
1
reply
8.7k
views
Answer: Answer: Parse VCF file
updated 2.6 years ago by 44k • written 9.8 years ago by 3.2k
0
votes
3
replies
5.9k
views
Answer: A: Convert FASTQ to FASTA, filter, then convert filtered FASTA back into FASTQ
updated 5.1 years ago by 44k • written 10.0 years ago by 3.2k
0
votes
1
reply
6.4k
views
Answer: A: bwa report multiple alignments
updated 5.1 years ago by 44k • written 10.3 years ago by 3.2k
1
vote
1
reply
2.3k
views
Answer: A: Split merged BAM file
updated 5.1 years ago by 44k • written 10.5 years ago by 3.2k
0
votes
1
reply
3.2k
views
Comment: C: Can'T Find Indels With Samtools (Onyly Get Snps)
updated 5.1 years ago by 44k • written 10.7 years ago by 3.2k
1
vote
0
replies
5.7k
views
Comment: C: Calculating Sequencing Depth Of A Genomic Region
updated 5.1 years ago by 44k • written 10.7 years ago by 3.2k
0
votes
0
replies
7.9k
views
Comment: C: Go Component "Centromeric Region" Associated With Different Parts Of Chrs Of Ara
updated 5.1 years ago by 44k • written 12.7 years ago by 3.2k
0
votes
1
reply
2.4k
views
Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 6.2 years ago by 44k • written 8.7 years ago by 3.2k
0
votes
1
reply
2.2k
views
identify long stretches of DNA that 2 sequences share with low similarity (>85%)
blastn
updated 22 months ago by 44k • written 9.5 years ago by 3.2k
3
votes
2
replies
2.0k
views
How Do 5` And 3` Ltr Regions Of Ltr Retrotransposon Look Like?
updated 6.5 years ago by 20 • written 13.0 years ago by 3.2k
3
votes
3
replies
1.8k
views
WGS data for healthy human women sequenced on Illumina HiSeq 2000?
wgs 1000g illumina hiseq
updated 6.7 years ago by 20 • written 7.1 years ago by 3.2k
0
votes
1
reply
2.8k
views
mpileup for PacBio reads
PacBio mpileup variants calling quiver
updated 6.9 years ago by ▴ 280 • written 7.6 years ago by 3.2k
0
votes
0
replies
1.8k
views
Comment: C: positive selection project
7.1 years ago by Biomonika (Noolean) 3.2k
0
votes
0
replies
1.8k
views
Comment: C: WGS data for healthy human women sequenced on Illumina HiSeq 2000?
7.1 years ago by Biomonika (Noolean) 3.2k
4
votes
4
replies
7.8k
views
Human transcriptome reference for RNASeq analysis
human transcriptome RNA-seq
updated 2.3 years ago by 44k • written 9.0 years ago by 3.2k
1
vote
1
reply
92k
views
Comment: C: Selecting Random Pairs From Fastq?
7.2 years ago by Biomonika (Noolean) 3.2k
0
votes
0
replies
53k
views
Comment: C: How To Split A Multiple Fasta
7.7 years ago by Biomonika (Noolean) 3.2k
0
votes
1
reply
2.8k
views
Comment: C: avoid within table correlations in rcorr
7.8 years ago by Biomonika (Noolean) 3.2k
0
votes
1
reply
3.9k
views
Comment: C: Align short reads to multifasta reference - cant see in IGV
7.8 years ago by Biomonika (Noolean) 3.2k
3
votes
0
replies
4.7k
views
Answer: A: what do read with blue outline represent in IGV?
7.8 years ago by Biomonika (Noolean) 3.2k
0
votes
0
replies
2.1k
views
Comment: C: Who is an appropriate person to ask for references while applying for PhD?
7.8 years ago by Biomonika (Noolean) 3.2k
0
votes
1
reply
1.9k
views
Comment: C: Where does my RNASeq contamination fits on the Tree of Life?
7.8 years ago by Biomonika (Noolean) 3.2k
2
votes
4
replies
1.9k
views
Where does my RNASeq contamination fits on the Tree of Life?
RNA-Seq rna-seq contamination species algae
7.8 years ago by Biomonika (Noolean) 3.2k
0
votes
1
reply
2.2k
views
Answer: A: how to replace dot as 'Missing' value for all columns using sed
8.0 years ago by Biomonika (Noolean) 3.2k
0
votes
1
reply
2.5k
views
Comment: C: Uniting SRA Data into a single file
8.0 years ago by Biomonika (Noolean) 3.2k
2
votes
5
replies
4.8k
views
Different Runs Of Real Time Pcr, Comparing Expression Of All Genes According To Housekeeping Gene
pcr gene normalization
updated 8.1 years ago by 20 • written 12.8 years ago by 3.2k
0
votes
0
replies
1.9k
views
Comment: C: storage space for BAM files in the cloud, on the server, Galaxy or GenomeSpace
8.2 years ago by Biomonika (Noolean) 3.2k
0
votes
0
replies
1.6k
views
Comment: C: total newbie staring into headlights
8.2 years ago by Biomonika (Noolean) 3.2k
445 results • Page 1 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6