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340
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Answer: Answer: How to find and visualize expression level of a dataset?
8 months ago by BioinfGuru ★ 2.1k
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0
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631
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Comment: Comment: RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditi
8 months ago by BioinfGuru ★ 2.1k
1
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2
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631
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RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditions
RNA-seq DESeq EdgeR Batch-effect DEGs
8 months ago by BioinfGuru ★ 2.1k
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0
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441
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Comment: Comment: What GC content should I expect?
8 months ago by BioinfGuru ★ 2.1k
1
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2
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441
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What GC content should I expect?
RNA-seq GC-content
updated 8 months ago by 85k • written 8 months ago by ★ 2.1k
1
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0
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559
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Comment: Comment: How do I collapse rows of a tibble in R?
8 months ago by BioinfGuru ★ 2.1k
3
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2
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559
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How do I collapse rows of a tibble in R?
R tidyverse tibble collapse
8 months ago by BioinfGuru ★ 2.1k
3
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2
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1.1k
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RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or 'exon'
featureCounts NCBI Ensembl GFF rnaseq
updated 8 months ago by ★ 7.6k • written 9 months ago by ★ 2.1k
2
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0
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1.1k
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
8 months ago by BioinfGuru ★ 2.1k
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0
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1.1k
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Comment: Comment: How to download multiple .gz files from Ensembl Protists database
9 months ago by BioinfGuru ★ 2.1k
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0
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7.6k
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Comment: Comment: How to get the chromosome numbers from RefSeq accession IDs?
9 months ago by BioinfGuru ★ 2.1k
0
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0
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427
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Comment: Comment: RNA-Seq | DESeq2 | differentially expressed genes | Dispersion
9 months ago by BioinfGuru ★ 2.1k
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0
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15k
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Answer: Answer: ERROR: failed to find the gene identifier attribute in the 9th column of the pro
8 months ago by BioinfGuru ★ 2.1k
3
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2
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2.5k
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From cuffmerge to cuffdiff: What input for cuffdiff?
rna-seq cuffmerge cuffdiff treated controls
updated 4.1 years ago by 20 • written 8.4 years ago by ★ 2.1k
3
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7
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2.5k
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Tissue Specificity R-package
tissue specificity R package pipeline publication
updated 5.4 years ago by 20 • written 6.7 years ago by ★ 2.1k
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0
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21k
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Answer: A: Checking fastq is valid
updated 5.5 years ago by 44k • written 7.9 years ago by ★ 2.1k
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0
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6.0k
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Comment: C: Quantile normalisation: raw rpkm or log2rpkm?
updated 5.8 years ago by 44k • written 8.1 years ago by ★ 2.1k
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1
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1.6k
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Comment: C: Can i use ucsc track browser without a reference organism?
6.2 years ago by BioinfGuru ★ 2.1k
1
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1
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1.6k
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Comment: C: Can i use ucsc track browser without a reference organism?
6.2 years ago by BioinfGuru ★ 2.1k
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0
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7.3k
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Comment: C: mitochondrial blacklists ATAC-Seq
updated 6.2 years ago by 44k • written 7.7 years ago by ★ 2.1k
1
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1
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7.3k
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Answer: A: mitochondrial blacklists ATAC-Seq
updated 6.2 years ago by 44k • written 7.7 years ago by ★ 2.1k
1
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1
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5.0k
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Comment: C: Confused about merging RNA-seq lanes/runs
6.4 years ago by BioinfGuru ★ 2.1k
8
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3
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5.0k
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Confused about merging RNA-seq lanes/runs
Merge RNA-seq samples runs lanes
updated 6.4 years ago by 147k • written 6.4 years ago by ★ 2.1k
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2
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5.0k
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Comment: C: Can we concatenate two fastq files from same sample but different runs
6.4 years ago by BioinfGuru ★ 2.1k
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0
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7.3k
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Answer: C: Picard MarkDuplicates flag vs remove issue
6.4 years ago by BioinfGuru ★ 2.1k
0
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1
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7.3k
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Comment: C: Picard MarkDuplicates flag vs remove issue
6.4 years ago by BioinfGuru ★ 2.1k
1
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0
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2.1k
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Comment: C: Is the sequence quality good enough?
6.4 years ago by BioinfGuru ★ 2.1k
9
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7
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2.1k
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Is the sequence quality good enough?
WGS HISEQ4000 QC
6.4 years ago by BioinfGuru ★ 2.1k
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0
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2.1k
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Comment: C: Is the sequence quality good enough?
6.4 years ago by BioinfGuru ★ 2.1k
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0
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2.1k
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Comment: C: Is the sequence quality good enough?
6.4 years ago by BioinfGuru ★ 2.1k
1
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0
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2.3k
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Comment: C: Low mapping percentage after mapping RNA-seq reads to a closely related species
6.5 years ago by BioinfGuru ★ 2.1k
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0
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1.7k
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Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
SNP GATK pipeline variant analysis
6.5 years ago by BioinfGuru ★ 2.1k
0
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0
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2.6k
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Comment: C: HaplotypeCaller output - All records are non-variant - Have I gone wrong somwher
6.5 years ago by BioinfGuru ★ 2.1k
2
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2
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2.6k
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HaplotypeCaller output - All records are non-variant - Have I gone wrong somewhere?
SNP haplotypecaller NON_REF gatk
6.5 years ago by BioinfGuru ★ 2.1k
2
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1
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13k
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Comment: C: How to select an aligner?
6.5 years ago by BioinfGuru ★ 2.1k
4
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1
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13k
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Answer: A: How to select an aligner?
6.5 years ago by BioinfGuru ★ 2.1k
0
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1
reply
3.3k
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Comment: C: Parsing Blast output on linux/unix
6.5 years ago by BioinfGuru ★ 2.1k
0
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0
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3.0k
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Comment: C: GATK SNPs calling multiple sample without any known SNPs database
6.5 years ago by BioinfGuru ★ 2.1k
0
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1
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3.0k
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Answer: A: GATK SNPs calling multiple sample without any known SNPs database
6.5 years ago by BioinfGuru ★ 2.1k
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0
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1.5k
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Answer: A: Are there needs to perform imputation for genotype generated from WGS ?
6.5 years ago by BioinfGuru ★ 2.1k
1
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0
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1.5k
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Answer: A: Protein Prediction Software - Any Recommendations? (template based vs non-templa
6.5 years ago by BioinfGuru ★ 2.1k
1
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0
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2.9k
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Answer: A: removing batch effects from large number of data sets
6.5 years ago by BioinfGuru ★ 2.1k
2
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1
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2.2k
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Comment: C: location of mutations
6.5 years ago by BioinfGuru ★ 2.1k
1
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1
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2.2k
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Answer: A: location of mutations
6.5 years ago by BioinfGuru ★ 2.1k
0
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1
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11k
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Comment: C: STAR output - high multi-mapping, low alignment (human)
6.5 years ago by BioinfGuru ★ 2.1k
3
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1
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11k
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Answer: A: STAR output - high multi-mapping, low alignment (human)
6.5 years ago by BioinfGuru ★ 2.1k
1
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0
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2.1k
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Answer: A: How to assess extent of cell-type admixtures from bulk RNA-seq data for a single
6.5 years ago by BioinfGuru ★ 2.1k
1
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2
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6.1k
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Answer: A: How to run bcftools roh with multiple samples vcf
6.5 years ago by BioinfGuru ★ 2.1k
0
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2
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6.7k
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Answer: A: MACS2 output (fold enrichment)
6.5 years ago by BioinfGuru ★ 2.1k
0
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3
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1.1k
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Answer: C: perl script 'blast_rod_finder.pl' not giving output but no errors either
6.5 years ago by BioinfGuru ★ 2.1k
478 results • Page 3 of 10
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