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Gene Enrichment Analysis
Gene-Ontology Enrichment GO
updated 3 months ago by 44k • written 3 months ago by ▴ 170
3
votes
1
reply
2.6k
views
Lastz multi thread options
lastz alignment
updated 3 months ago by 44k • written 8.1 years ago by ▴ 170
0
votes
1
reply
515
views
How can the reads be assemble to unitigs with ONLY EXACT sequence overlaps?
Genome Assembly
updated 2.2 years ago by ★ 1.4k • written 2.2 years ago by ▴ 170
4
votes
8
replies
3.3k
views
Polyploid genome and mapping !!
alignment next-gen
updated 2.5 years ago by 7.0k • written 8.1 years ago by ▴ 170
0
votes
3
replies
1.2k
views
BWA to map reads to distant genome
genome Genome Mappings bwa-mem parameters
4.5 years ago by BioGeek ▴ 170
1
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3
replies
1.9k
views
How to extract all ONT reads that connect/overlaps two or more contigs ?
overlaps nanopore reads scaffolding
updated 4.9 years ago by ▴ 160 • written 6.7 years ago by ▴ 170
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0
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2.6k
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Comment: C: How to extract coordinate of hard and soft clipped long reads ?
5.9 years ago by BioGeek ▴ 170
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0
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9.0k
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Answer: A: Bioinformatics/Biotech Firms In India
5.9 years ago by BioGeek ▴ 170
0
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5
replies
2.6k
views
How to extract coordinate of hard and soft clipped long reads ?
longreads BAM clipped mapping
updated 6.1 years ago by ★ 3.3k • written 6.1 years ago by ▴ 170
0
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0
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6.7k
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Comment: C: Extending ends of sequences with the help of reads?
6.3 years ago by BioGeek ▴ 170
2
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1
reply
4.2k
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PacBio and ONT reads difference !
nanopore pacbio reads
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 170
0
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1
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1.2k
views
Comment: C: Break the assembled genome by error-some regions !
6.3 years ago by BioGeek ▴ 170
0
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4
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1.2k
views
Break the assembled genome by error-some regions !
ont genome breaks error Assembly
6.3 years ago by BioGeek ▴ 170
0
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1
reply
941
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Is there any mapper to map the long/short reads against phased genome?
mapper phased alignment reads longreads
6.4 years ago by BioGeek ▴ 170
0
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0
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1.9k
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Comment: C: How to extract all ONT reads that connect/overlaps two or more contigs ?
6.7 years ago by BioGeek ▴ 170
0
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1
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3.7k
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Comment: C: How to plot overlapping fragments in Circos ?
6.8 years ago by BioGeek ▴ 170
6
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6
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3.7k
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How to plot overlapping fragments in Circos ?
Circos Plots Overlaps
6.8 years ago by BioGeek ▴ 170
0
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1
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3.7k
views
Comment: A: How to plot overlapping fragments in Circos ?
6.8 years ago by BioGeek ▴ 170
1
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3
replies
1.1k
views
How to present mapping result ?
mapping result
updated 6.8 years ago by ★ 3.9k • written 6.8 years ago by ▴ 170
8
votes
2
replies
3.8k
views
How to remove split/broken reads from bam file
split samtools graphmap nanopore minimap2
updated 6.8 years ago by ★ 3.6k • written 6.8 years ago by ▴ 170
0
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7
replies
2.4k
views
Does the PacBio Reads only contain positive (+) strand?
PacBio NGS
updated 6.9 years ago by ▴ 50 • written 7.7 years ago by ▴ 170
0
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0
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1.1k
views
Does MIRA do the phasing ?
genome sequencing Assembly mira ngs
7.0 years ago by BioGeek ▴ 170
0
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1
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6.1k
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Comment: C: Remove duplicates reads Ids
7.6 years ago by BioGeek ▴ 170
0
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1
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6.1k
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Answer: A: Remove duplicates reads Ids
7.6 years ago by BioGeek ▴ 170
3
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12
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6.1k
views
Remove duplicates reads Ids
reads ids duplicates mapping fastq
7.6 years ago by BioGeek ▴ 170
0
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1
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6.1k
views
Comment: C: Remove duplicates reads Ids
7.6 years ago by BioGeek ▴ 170
0
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0
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6.1k
views
Comment: C: Remove duplicates reads Ids
7.6 years ago by BioGeek ▴ 170
1
vote
1
reply
2.1k
views
How to extract high coverage region from BAM?
ngs coverage bam mapping reads
updated 7.6 years ago by 164k • written 7.6 years ago by ▴ 170
1
vote
2
replies
1.9k
views
How does coverage of all contigs varies?
coverage ngs reads depth
updated 7.7 years ago by 35k • written 7.7 years ago by ▴ 170
2
votes
1
reply
1.3k
views
Does all assemble genome stats available on NCBI are at haploid level ?
genome gene stats assembly
updated 7.7 years ago by 104k • written 7.7 years ago by ▴ 170
0
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0
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2.4k
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Comment: C: Does the PacBio Reads only contain positive (+) strand?
7.7 years ago by BioGeek ▴ 170
0
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1
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2.6k
views
Comment: C: How to extract all - strand mapped reads location of reference genome using BAM
7.7 years ago by BioGeek ▴ 170
0
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3
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2.6k
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How to extract all - strand mapped reads location of reference genome using BAM file?
BAM SAM NGS Reads
7.7 years ago by BioGeek ▴ 170
3
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0
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3.8k
views
Answer: A: BINC Exam question paper
7.7 years ago by BioGeek ▴ 170
2
votes
4
replies
2.6k
views
Perl::ForkManager does not speed up ATCG calculation
Perl Parallel Speed ForkManager
updated 7.8 years ago by 44k • written 7.8 years ago by ▴ 170
0
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0
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1.8k
views
Comment: C: Differentiate "no coverage regions" in bedtools
7.9 years ago by BioGeek ▴ 170
0
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0
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1.8k
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Comment: C: Differentiate "no coverage regions" in bedtools
7.9 years ago by BioGeek ▴ 170
3
votes
4
replies
1.8k
views
Differentiate "no coverage regions" in bedtools
ngs bedtools coverage split
updated 7.9 years ago by ★ 2.9k • written 7.9 years ago by ▴ 170
0
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1
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3.3k
views
Comment: C: Polyploid genome and mapping !!
8.1 years ago by BioGeek ▴ 170
21
votes
3
replies
2.7k
views
How to differentiate between "horizontal gene transfer" and "contamination" in NGS data?
genome ngs contamination horizontal
updated 8.1 years ago by 55k • written 8.4 years ago by ▴ 170
0
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1
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1.7k
views
Comment: C: Reduce the number of PE reads by half
8.3 years ago by BioGeek ▴ 170
6
votes
8
replies
1.7k
views
Reduce the number of PE reads by half
Assembly NGS PE Reads
updated 8.3 years ago by 13k • written 8.3 years ago by ▴ 170
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