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0
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0
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531
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valid pairs to .hic
HIC
21 months ago by GK1610 ▴ 120
0
votes
1
reply
746
views
Deconvolution blood RNASeq samples
RNASeq
updated 3.0 years ago by 11k • written 3.0 years ago by ▴ 120
0
votes
1
reply
974
views
CTCF sites TAD
3D genome
updated 3.0 years ago by 152k • written 3.0 years ago by ▴ 120
0
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1
reply
1.0k
views
Comment: Comment: highly correlated hidden factors
3.2 years ago by GK1610 ▴ 120
0
votes
1
reply
838
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 3.4 years ago by 88k • written 3.4 years ago by ▴ 120
0
votes
3
replies
1.0k
views
highly correlated hidden factors
ATAC-Seq data exploration analysis
updated 3.2 years ago by • 0 • written 4.0 years ago by ▴ 120
0
votes
0
replies
676
views
Sequence length distribution after adapter trimming using trimmomatic
alignment
4.4 years ago by GK1610 ▴ 120
1
vote
0
replies
990
views
Answer: A: Location of the peaks from CHIP-seq data in the genome
4.4 years ago by GK1610 ▴ 120
1
vote
1
reply
940
views
Rat Genome and dbsnp file
genome
5.0 years ago by GK1610 ▴ 120
0
votes
1
reply
713
views
Structural Variants in a VCF file
SNP
5.0 years ago by GK1610 ▴ 120
1
vote
1
reply
1.7k
views
Merge WGS and genotype data
SNP
updated 5.7 years ago by 20 • written 6.3 years ago by ▴ 120
0
votes
0
replies
895
views
to check allelic biases in histone peaks
SNP ChIP-Seq
updated 6.0 years ago by 20 • written 6.2 years ago by ▴ 120
0
votes
0
replies
1.5k
views
QTLtools pca detects no varaints
snp
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 120
0
votes
1
reply
1.4k
views
GC content from bam to fasta file
ChIP-Seq
6.3 years ago by GK1610 ▴ 120
1
vote
1
reply
3.1k
views
bcftools concatenation error
SNP bcftools
updated 6.3 years ago by 15k • written 6.3 years ago by ▴ 120
0
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1
reply
5.1k
views
Answer: A: Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .
6.3 years ago by GK1610 ▴ 120
4
votes
3
replies
1.4k
views
variants filtering with maf>5% every 100kb
SNP
6.3 years ago by GK1610 ▴ 120
2
votes
2
replies
1.7k
views
change the columns of vcf file
SNP
updated 6.7 years ago by 20 • written 6.7 years ago by ▴ 120
2
votes
1
reply
3.7k
views
bamtools stats output
alignment sequencing
6.7 years ago by GK1610 ▴ 120
0
votes
0
replies
1.6k
views
liftover not giving same number of columns
snp genome
6.8 years ago by GK1610 ▴ 120
0
votes
0
replies
5.5k
views
Comment: C: Liftover error from picard
7.0 years ago by GK1610 ▴ 120
3
votes
2
replies
5.5k
views
Liftover error from picard
SNP software error
7.0 years ago by GK1610 ▴ 120
1
vote
1
reply
2.3k
views
Trimming reads of Chipseq samples
ChIP-Seq alignment
updated 7.0 years ago by 105k • written 7.0 years ago by ▴ 120
1
vote
1
reply
1.7k
views
GATK UnifiedGenotyper doesn't output the variants in vcf files
snp
updated 7.0 years ago by 166k • written 7.0 years ago by ▴ 120
1
vote
1
reply
6.6k
views
Answer: A: How to filter Michigan genotype imputation results
7.1 years ago by GK1610 ▴ 120
2
votes
3
replies
2.5k
views
combineVariants error for merging two vcf files
snp gatk combinevariants
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 120
0
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1
reply
2.6k
views
Comment: C: Add AF from 1000 genomes vcf file to a different vcf file
7.1 years ago by GK1610 ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: verifybamid results with freemix < 2% and chipmix > 10%
7.1 years ago by GK1610 ▴ 120
1
vote
2
replies
1.7k
views
verifybamid results with freemix < 2% and chipmix > 10%
SNP ChIP-Seq sequencing
updated 7.1 years ago by 48k • written 7.1 years ago by ▴ 120
0
votes
0
replies
2.6k
views
Comment: C: Add AF from 1000 genomes vcf file to a different vcf file
7.1 years ago by GK1610 ▴ 120
7
votes
5
replies
2.6k
views
Add AF from 1000 genomes vcf file to a different vcf file
SNP snp
updated 7.1 years ago by ★ 1.9k • written 7.1 years ago by ▴ 120
1
vote
0
replies
2.4k
views
What is chipmix and freemix in verifybamid
SNP sequencing
7.1 years ago by GK1610 ▴ 120
0
votes
1
reply
7.8k
views
Answer: A: How can I save the output from samtools and awk as a bam file?
updated 7.2 years ago by 152k • written 8.9 years ago by ▴ 120
14
votes
18
replies
7.8k
views
7 follow
How can I save the output from samtools and awk as a bam file?
ChIP-Seq
updated 7.2 years ago by 152k • written 8.9 years ago by ▴ 120
0
votes
0
replies
3.1k
views
Comment: C: bcftools to GATK
7.2 years ago by GK1610 ▴ 120
0
votes
1
reply
3.1k
views
Comment: C: bcftools to GATK
7.2 years ago by GK1610 ▴ 120
3
votes
6
replies
3.1k
views
bcftools to GATK
snp
updated 7.2 years ago by 166k • written 7.2 years ago by ▴ 120
0
votes
0
replies
3.0k
views
Comment: C: combine gvcf error
7.2 years ago by GK1610 ▴ 120
0
votes
1
reply
3.0k
views
Comment: C: combine gvcf error
7.2 years ago by GK1610 ▴ 120
0
votes
4
replies
3.0k
views
combine gvcf error
snp
updated 7.2 years ago by 166k • written 7.2 years ago by ▴ 120
0
votes
1
reply
2.5k
views
GATK GenotypeGVCFs output is empty gvcf file
SNP
updated 7.2 years ago by 166k • written 7.2 years ago by ▴ 120
0
votes
2
replies
2.4k
views
Comment: C: VCF files columns-biological explanation.
7.2 years ago by GK1610 ▴ 120
2
votes
6
replies
2.4k
views
VCF files columns-biological explanation.
SNP
updated 7.2 years ago by 48k • written 7.2 years ago by ▴ 120
0
votes
0
replies
2.4k
views
Comment: C: VCF files columns-biological explanation.
7.2 years ago by GK1610 ▴ 120
1
vote
0
replies
2.5k
views
Comment: C: combineVariants error for merging two vcf files
7.2 years ago by GK1610 ▴ 120
0
votes
1
reply
2.1k
views
MACS2 peaks filtering
ChIP-Seq
7.3 years ago by GK1610 ▴ 120
1
vote
1
reply
1.9k
views
From bed file to enrichment score
ChIP-Seq
updated 7.7 years ago by 20 • written 7.9 years ago by ▴ 120
1
vote
3
replies
2.7k
views
ChipSeeker genomic features
ChIP-Seq
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 120
0
votes
1
reply
2.7k
views
Comment: C: ChipSeeker genomic features
8.2 years ago by GK1610 ▴ 120
1
vote
2
replies
3.0k
views
UCSC browser upload files using dropbox link
ChIP-Seq
8.5 years ago by GK1610 ▴ 120
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