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0
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0
replies
390
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valid pairs to .hic
HIC
15 months ago by GK1610 ▴ 120
0
votes
1
reply
635
views
Deconvolution blood RNASeq samples
RNASeq
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 120
0
votes
1
reply
725
views
CTCF sites TAD
3D genome
updated 2.6 years ago by 148k • written 2.6 years ago by ▴ 120
0
votes
1
reply
894
views
Comment: Comment: highly correlated hidden factors
2.8 years ago by GK1610 ▴ 120
0
votes
1
reply
741
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 2.9 years ago by 86k • written 2.9 years ago by ▴ 120
0
votes
3
replies
894
views
highly correlated hidden factors
ATAC-Seq data exploration analysis
updated 2.7 years ago by • 0 • written 3.5 years ago by ▴ 120
0
votes
0
replies
604
views
Sequence length distribution after adapter trimming using trimmomatic
alignment
3.9 years ago by GK1610 ▴ 120
1
vote
0
replies
855
views
Answer: A: Location of the peaks from CHIP-seq data in the genome
3.9 years ago by GK1610 ▴ 120
1
vote
1
reply
877
views
Rat Genome and dbsnp file
genome
4.5 years ago by GK1610 ▴ 120
0
votes
1
reply
651
views
Structural Variants in a VCF file
SNP
4.5 years ago by GK1610 ▴ 120
1
vote
1
reply
1.6k
views
Merge WGS and genotype data
SNP
updated 5.2 years ago by 20 • written 5.8 years ago by ▴ 120
0
votes
0
replies
839
views
to check allelic biases in histone peaks
SNP ChIP-Seq
updated 5.5 years ago by 20 • written 5.7 years ago by ▴ 120
0
votes
0
replies
1.4k
views
QTLtools pca detects no varaints
snp
updated 5.7 years ago by 20 • written 5.8 years ago by ▴ 120
0
votes
1
reply
1.3k
views
GC content from bam to fasta file
ChIP-Seq
5.8 years ago by GK1610 ▴ 120
1
vote
1
reply
3.0k
views
bcftools concatenation error
SNP bcftools
updated 5.8 years ago by 14k • written 5.8 years ago by ▴ 120
0
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1
reply
4.6k
views
Answer: A: Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .
5.8 years ago by GK1610 ▴ 120
4
votes
3
replies
1.2k
views
variants filtering with maf>5% every 100kb
SNP
5.8 years ago by GK1610 ▴ 120
2
votes
2
replies
1.6k
views
change the columns of vcf file
SNP
updated 6.2 years ago by 20 • written 6.2 years ago by ▴ 120
2
votes
1
reply
3.6k
views
bamtools stats output
alignment sequencing
6.2 years ago by GK1610 ▴ 120
0
votes
0
replies
1.5k
views
liftover not giving same number of columns
snp genome
6.3 years ago by GK1610 ▴ 120
0
votes
0
replies
5.1k
views
Comment: C: Liftover error from picard
6.5 years ago by GK1610 ▴ 120
3
votes
2
replies
5.1k
views
Liftover error from picard
SNP software error
6.5 years ago by GK1610 ▴ 120
1
vote
1
reply
2.3k
views
Trimming reads of Chipseq samples
ChIP-Seq alignment
updated 6.5 years ago by 105k • written 6.5 years ago by ▴ 120
1
vote
1
reply
1.6k
views
GATK UnifiedGenotyper doesn't output the variants in vcf files
snp
updated 6.5 years ago by 164k • written 6.5 years ago by ▴ 120
1
vote
1
reply
6.4k
views
Answer: A: How to filter Michigan genotype imputation results
6.6 years ago by GK1610 ▴ 120
2
votes
3
replies
2.4k
views
combineVariants error for merging two vcf files
snp gatk combinevariants
updated 6.6 years ago by 20 • written 6.8 years ago by ▴ 120
0
votes
1
reply
2.4k
views
Comment: C: Add AF from 1000 genomes vcf file to a different vcf file
6.6 years ago by GK1610 ▴ 120
0
votes
0
replies
1.6k
views
Comment: C: verifybamid results with freemix < 2% and chipmix > 10%
6.6 years ago by GK1610 ▴ 120
1
vote
2
replies
1.6k
views
verifybamid results with freemix < 2% and chipmix > 10%
SNP ChIP-Seq sequencing
updated 6.6 years ago by 47k • written 6.6 years ago by ▴ 120
0
votes
0
replies
2.4k
views
Comment: C: Add AF from 1000 genomes vcf file to a different vcf file
6.6 years ago by GK1610 ▴ 120
7
votes
5
replies
2.4k
views
Add AF from 1000 genomes vcf file to a different vcf file
SNP snp
updated 6.6 years ago by ★ 1.9k • written 6.6 years ago by ▴ 120
1
vote
0
replies
2.3k
views
What is chipmix and freemix in verifybamid
SNP sequencing
6.6 years ago by GK1610 ▴ 120
0
votes
1
reply
7.3k
views
Answer: A: How can I save the output from samtools and awk as a bam file?
updated 6.7 years ago by 148k • written 8.4 years ago by ▴ 120
14
votes
18
replies
7.3k
views
7 follow
How can I save the output from samtools and awk as a bam file?
ChIP-Seq
updated 6.7 years ago by 148k • written 8.4 years ago by ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: bcftools to GATK
6.7 years ago by GK1610 ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: bcftools to GATK
6.7 years ago by GK1610 ▴ 120
3
votes
6
replies
2.8k
views
bcftools to GATK
snp
updated 6.7 years ago by 164k • written 6.7 years ago by ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: combine gvcf error
6.7 years ago by GK1610 ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: combine gvcf error
6.7 years ago by GK1610 ▴ 120
0
votes
4
replies
2.8k
views
combine gvcf error
snp
updated 6.7 years ago by 164k • written 6.7 years ago by ▴ 120
0
votes
1
reply
2.4k
views
GATK GenotypeGVCFs output is empty gvcf file
SNP
updated 6.7 years ago by 164k • written 6.7 years ago by ▴ 120
0
votes
2
replies
2.2k
views
Comment: C: VCF files columns-biological explanation.
6.7 years ago by GK1610 ▴ 120
2
votes
6
replies
2.2k
views
VCF files columns-biological explanation.
SNP
updated 6.7 years ago by 47k • written 6.7 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: VCF files columns-biological explanation.
6.7 years ago by GK1610 ▴ 120
1
vote
0
replies
2.4k
views
Comment: C: combineVariants error for merging two vcf files
6.7 years ago by GK1610 ▴ 120
0
votes
1
reply
2.0k
views
MACS2 peaks filtering
ChIP-Seq
6.8 years ago by GK1610 ▴ 120
1
vote
1
reply
1.8k
views
From bed file to enrichment score
ChIP-Seq
updated 7.2 years ago by 20 • written 7.4 years ago by ▴ 120
1
vote
3
replies
2.6k
views
ChipSeeker genomic features
ChIP-Seq
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 120
0
votes
1
reply
2.6k
views
Comment: C: ChipSeeker genomic features
7.7 years ago by GK1610 ▴ 120
1
vote
2
replies
2.9k
views
UCSC browser upload files using dropbox link
ChIP-Seq
8.0 years ago by GK1610 ▴ 120
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