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3
votes
7
replies
8.8k
views
How does edgeR do ERCC spike-in normalization?
RNA-Seq R
updated 23 months ago by 44k • written 8.2 years ago by ▴ 510
5
votes
2
replies
3.4k
views
How to calculate the similairty of two protein structures in .pdb file format or how to measure the accuracy of alphafold predicted protein structure?
alphafold structure protein
updated 3.1 years ago by • 0 • written 3.3 years ago by ▴ 510
0
votes
0
replies
12k
views
Comment: Comment: Understanding Conditional analysis
3.2 years ago by moxu ▴ 510
2
votes
7
replies
5.0k
views
6 follow
How to remove samples with no genotypes from vcf
VCF
updated 2.1 years ago by ▴ 50 • written 3.5 years ago by ▴ 510
0
votes
0
replies
2.3k
views
Comment: Comment: Up-to-date GWAS Power Calculator and GWAS power comparison
3.6 years ago by moxu ▴ 510
2
votes
2
replies
2.3k
views
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS power
3.6 years ago by moxu ▴ 510
0
votes
1
reply
779
views
How Did 1000 Genomes Project Enroll Samples To Populations
genomes population
4.4 years ago by moxu ▴ 510
0
votes
0
replies
1.1k
views
How to build an imputation reference panel from a fasta file of many samples
sequencing SNP alignment Assembly
5.5 years ago by moxu ▴ 510
0
votes
0
replies
9.8k
views
Comment: C: How to plot haplogroup map with pie charts?
5.7 years ago by moxu ▴ 510
1
vote
1
reply
27k
views
Comment: C: Y-DNA and mtDNA Haplogroup Predictor
5.7 years ago by moxu ▴ 510
3
votes
1
reply
27k
views
Answer: A: Y-DNA and mtDNA Haplogroup Predictor
5.7 years ago by moxu ▴ 510
0
votes
0
replies
3.6k
views
Comment: A: Plot local ancestry on chromosome
6.0 years ago by moxu ▴ 510
0
votes
0
replies
3.0k
views
Comment: C: How plink calculates the INFO scores ?
6.2 years ago by moxu ▴ 510
2
votes
8
replies
7.0k
views
8 follow
Step by step instructions to phase with Eagle?
snp genome software error
updated 3.6 years ago by • 0 • written 8.2 years ago by ▴ 510
2
votes
1
reply
1.4k
views
How to convert Merlin phased result files to vcf
genome snp assembly software error
6.3 years ago by moxu ▴ 510
2
votes
0
replies
1.4k
views
Answer: A: How to convert Merlin phased result files to vcf
6.3 years ago by moxu ▴ 510
1
vote
0
replies
1.8k
views
How to resolve kinship with the software "king" using GWAS genotyping data?
SNP
6.4 years ago by moxu ▴ 510
0
votes
0
replies
42k
views
Comment: C: How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
6.5 years ago by moxu ▴ 510
3
votes
8
replies
4.7k
views
Can someone please help me run any GATK4 pipeline?
software error sequencing next-gen snp
updated 2.7 years ago by ▴ 40 • written 6.5 years ago by ▴ 510
0
votes
1
reply
4.7k
views
Comment: C: Can someone please help me run any GATK4 pipeline?
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 510
0
votes
1
reply
4.7k
views
Comment: C: Can someone please help me run any GATK4 pipeline?
6.5 years ago by moxu ▴ 510
0
votes
0
replies
1.5k
views
Comment: C: Where to find information on LD ~ distance?
6.5 years ago by moxu ▴ 510
0
votes
0
replies
1.5k
views
Comment: C: Where to find information on LD ~ distance?
6.5 years ago by moxu ▴ 510
2
votes
4
replies
1.5k
views
Where to find information on LD ~ distance?
SNP genome
6.5 years ago by moxu ▴ 510
0
votes
0
replies
3.0k
views
Comment: C: GATK4 local computing workflow
6.5 years ago by moxu ▴ 510
4
votes
2
replies
3.0k
views
GATK4 local computing workflow
software error genome next-gen sequencing
updated 6.5 years ago by ★ 1.2k • written 6.6 years ago by ▴ 510
1
vote
5
replies
1.6k
views
How can I make RSEM to align ChIPseq signal to the nearest gene?
ChIP-Seq next-gen sequencing alignment gene
updated 6.6 years ago by 20 • written 7.1 years ago by ▴ 510
0
votes
1
reply
1.0k
views
Why mach1 is not imputing SNPs?
SNP software error
6.6 years ago by moxu ▴ 510
0
votes
0
replies
1.0k
views
Answer: A: Why mach1 is not imputing SNPs?
6.6 years ago by moxu ▴ 510
0
votes
0
replies
3.0k
views
Comment: A: How To Create The .Legend And .Phase Files For Gwas Imputation When Using Mach
6.6 years ago by moxu ▴ 510
0
votes
1
reply
2.6k
views
Comment: C: HapMap 3 phased haplotype
6.6 years ago by moxu ▴ 510
0
votes
0
replies
1.1k
views
mach1 phasing reference Haplotypes file(s)
SNP software error
6.6 years ago by moxu ▴ 510
0
votes
0
replies
4.6k
views
Comment: C: Run Time Of Imputation Using 1000 Genomes
6.6 years ago by moxu ▴ 510
0
votes
0
replies
3.1k
views
Comment: C: Merlin format, Mach, Plink, Plink2, and best practices of snp imputation
6.6 years ago by moxu ▴ 510
0
votes
1
reply
3.1k
views
Comment: C: Merlin format, Mach, Plink, Plink2, and best practices of snp imputation
6.6 years ago by moxu ▴ 510
4
votes
4
replies
3.1k
views
Merlin format, Mach, Plink, Plink2, and best practices of snp imputation
SNP software error
6.6 years ago by moxu ▴ 510
1
vote
0
replies
2.3k
views
Comment: C: How to map probeset associated statistics to gene statistics in microarray diffe
6.7 years ago by moxu ▴ 510
5
votes
2
replies
2.3k
views
How to map probeset associated statistics to gene statistics in microarray differential expression analysis?
gene R RNA-Seq
updated 6.7 years ago by 88k • written 6.7 years ago by ▴ 510
0
votes
0
replies
3.0k
views
Comment: C: rsem-prepare-reference and mouse mm9 genome reference files
6.7 years ago by moxu ▴ 510
0
votes
1
reply
5.2k
views
Comment: C: microarray, RNAseq, CEL, edgeR, etc. for DGE analysis
6.8 years ago by moxu ▴ 510
0
votes
0
replies
2.0k
views
Comment: C: paired-end, single-end, polyA tail, 500bp, and removal of RNA genes
6.8 years ago by moxu ▴ 510
0
votes
1
reply
2.0k
views
Comment: C: paired-end, single-end, polyA tail, 500bp, and removal of RNA genes
6.8 years ago by moxu ▴ 510
3
votes
6
replies
2.0k
views
paired-end, single-end, polyA tail, 500bp, and removal of RNA genes
next-gen rna-seq
6.8 years ago by moxu ▴ 510
5
votes
4
replies
5.2k
views
microarray, RNAseq, CEL, edgeR, etc. for DGE analysis
RNA-Seq microarray gene
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 510
0
votes
0
replies
9.0k
views
Comment: C: heatmap.2 has become very slow in plotting heatmap.
6.9 years ago by moxu ▴ 510
0
votes
0
replies
1.8k
views
Comment: C: mixing R ggplot2 with old style plot
6.9 years ago by moxu ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: mixing R ggplot2 with old style plot
6.9 years ago by moxu ▴ 510
0
votes
4
replies
1.8k
views
mixing R ggplot2 with old style plot
R software error SNP
updated 6.9 years ago by 15k • written 6.9 years ago by ▴ 510
1
vote
0
replies
5.0k
views
Comment: C: Enrichment Analysis from DESeq2 data
6.9 years ago by moxu ▴ 510
1
vote
0
replies
1.3k
views
edgeR and contrast
RNA-Seq next-gen R
6.9 years ago by moxu ▴ 510
221 results • Page 1 of 5
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