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Comment: C: edgeR analysis dilemma -- what samples to include
7.2 years ago by moxu ▴ 510
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Comment: C: edgeR analysis dilemma -- what samples to include
7.2 years ago by moxu ▴ 510
7
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8
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2.4k
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edgeR analysis dilemma -- what samples to include
RNA-Seq software error R next-gen
updated 7.2 years ago by 13k • written 7.2 years ago by ▴ 510
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2.4k
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Comment: C: edgeR analysis dilemma -- what samples to include
7.2 years ago by moxu ▴ 510
0
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0
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2.4k
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Comment: C: edgeR analysis dilemma -- what samples to include
7.2 years ago by moxu ▴ 510
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1
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4.7k
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Comment: C: heatmap.2 row clustering does not look right
7.2 years ago by moxu ▴ 510
3
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3
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4.7k
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heatmap.2 row clustering does not look right
RNA-Seq software error next-gen R
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 510
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3.1k
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Comment: C: rsem-prepare-reference and mouse mm9 genome reference files
7.2 years ago by moxu ▴ 510
2
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4
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3.1k
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rsem-prepare-reference and mouse mm9 genome reference files
RNA-Seq R genome next-gen alignment
updated 7.2 years ago by ▴ 40 • written 7.3 years ago by ▴ 510
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3.0k
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Answer: A: How to install a bioconductor package RMySQL and specify R parameters
7.3 years ago by moxu ▴ 510
2
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4
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3.0k
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How to install a bioconductor package RMySQL and specify R parameters
R software error next-gen ChIP-Seq
7.3 years ago by moxu ▴ 510
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1
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3.0k
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Comment: C: How to install a bioconductor package RMySQL and specify R parameters
7.3 years ago by moxu ▴ 510
1
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0
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3.4k
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Answer: A: How to generate a ROC curve for a dataset?
7.3 years ago by moxu ▴ 510
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1
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1.6k
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Comment: C: How can I make RSEM to align ChIPseq signal to the nearest gene?
7.3 years ago by moxu ▴ 510
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1.6k
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Comment: C: How can I make RSEM to align ChIPseq signal to the nearest gene?
7.3 years ago by moxu ▴ 510
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0
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754
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How does RSEM allocate ChIPseq signals to genes?
ChIP-Seq Assembly gene next-gen
7.4 years ago by moxu ▴ 510
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0
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15k
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Comment: C: t-test or linear regression?
7.4 years ago by moxu ▴ 510
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1
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2.0k
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Comment: C: edgeR RNA-seq Results Across Conditions
7.5 years ago by moxu ▴ 510
1
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1
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5.3k
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Answer: A: Enrichment Analysis from DESeq2 data
7.6 years ago by moxu ▴ 510
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0
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2.3k
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Comment: C: SNPEFF for de novo transcriptome annotation
7.6 years ago by moxu ▴ 510
3
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1
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2.3k
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Answer: A: SNPEFF for de novo transcriptome annotation
7.6 years ago by moxu ▴ 510
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0
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5.5k
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Comment: C: snpEff inappropriate interpretation of variants?
7.6 years ago by moxu ▴ 510
0
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1
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5.5k
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Comment: C: snpEff inappropriate interpretation of variants?
7.6 years ago by moxu ▴ 510
8
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10
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5.5k
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snpEff inappropriate interpretation of variants?
RNA-Seq software error alignment variant calling
updated 7.6 years ago by ★ 1.8k • written 7.6 years ago by ▴ 510
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0
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1.7k
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Comment: C: functional variant discovery after GATK variant calling
7.6 years ago by moxu ▴ 510
1
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3.3k
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Answer: A: adjusting p-value for GO analysis
7.6 years ago by moxu ▴ 510
1
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2
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5.5k
views
Comment: C: snpEff inappropriate interpretation of variants?
7.6 years ago by moxu ▴ 510
7
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1
reply
1.1k
views
Does CAG code for Valine?
gene sequencing
updated 7.7 years ago by 165k • written 7.7 years ago by ▴ 510
3
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3
replies
1.7k
views
functional variant discovery after GATK variant calling
gene SNP genome
updated 7.7 years ago by ▴ 990 • written 7.7 years ago by ▴ 510
0
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1
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2.4k
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Comment: C: why use partial correlation for gene-gene network construction
7.7 years ago by moxu ▴ 510
2
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3
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2.4k
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why use partial correlation for gene-gene network construction
R gene rna-seq
7.7 years ago by moxu ▴ 510
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0
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1.1k
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partial correlation and conditions
R rna-seq
7.7 years ago by moxu ▴ 510
1
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1
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
0
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1
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
0
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1
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
0
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1
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
0
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1
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
0
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0
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4.9k
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Comment: C: edgeR again: can you AND multiple conditions for analysis?
7.7 years ago by moxu ▴ 510
4
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13
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4.9k
views
edgeR again: can you AND multiple conditions for analysis?
R RNA-Seq
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 510
0
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0
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2.3k
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Comment: C: edgeR normalization and partial correlation matrix calculation
7.8 years ago by moxu ▴ 510
1
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3
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4.4k
views
multivariate analysis of RNA-seq
RNA-Seq R next-gen
updated 7.8 years ago by 20 • written 7.9 years ago by ▴ 510
0
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1
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3.4k
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Comment: C: Gene-Gene interaction Network Analysis and Visualization Software
7.8 years ago by moxu ▴ 510
0
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0
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3.4k
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Comment: C: Gene-Gene interaction Network Analysis and Visualization Software
7.8 years ago by moxu ▴ 510
0
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5
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3.4k
views
Gene-Gene interaction Network Analysis and Visualization Software
R RNA-Seq gene
updated 7.8 years ago by 27k • written 7.8 years ago by ▴ 510
1
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1
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2.3k
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edgeR normalization and partial correlation matrix calculation
next-gen rna-seq R gene
7.8 years ago by moxu ▴ 510
0
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0
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3.3k
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Comment: C: How does one refer gene gene network from a partial correlation matrix?
7.8 years ago by moxu ▴ 510
0
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1
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3.3k
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Comment: C: How does one refer gene gene network from a partial correlation matrix?
7.8 years ago by moxu ▴ 510
0
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1
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15k
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Comment: C: How many genes to include for a GSEA analysis
7.8 years ago by moxu ▴ 510
0
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0
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15k
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Comment: C: How many genes to include for a GSEA analysis
7.8 years ago by moxu ▴ 510
0
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2
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15k
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Comment: C: How many genes to include for a GSEA analysis
7.8 years ago by moxu ▴ 510
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