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36
votes
23
replies
24k
views
12 follow
Is there a tool that sorts gtf files?
RNA-Seq genome
updated 14 months ago by ▴ 140 • written 6.7 years ago by ▴ 710
19
votes
10
replies
14k
views
7 follow
Automatic Outlier Detection for RNA-seq data
RNA-Seq outlier rrcov
updated 3.2 years ago by ▴ 130 • written 7.1 years ago by ▴ 710
1
vote
0
replies
9.0k
views
Comment: C: Correlation heatmaps: use correlation as clustering distance or not?
3.7 years ago by JJ ▴ 710
0
votes
0
replies
3.8k
views
Comment: C: Tuning of the HISAT2 parameters --mp and --sp
3.7 years ago by JJ ▴ 710
2
votes
3
replies
4.0k
views
VCF file (annotated with snpeff) to MAF
genome sequencing
updated 4.6 years ago by ▴ 20 • written 5.8 years ago by ▴ 710
0
votes
1
reply
593
views
Extract transcripts lacking a poly(A) tail
genome
updated 4.6 years ago by 20k • written 4.6 years ago by ▴ 710
0
votes
0
replies
1.4k
views
Comment: C: Handling Microarray datasets from different experiments for DEG analysis
4.8 years ago by JJ ▴ 710
1
vote
1
reply
1.4k
views
Answer: C: Handling Microarray datasets from different experiments for DEG analysis
4.8 years ago by JJ ▴ 710
0
votes
0
replies
1.0k
views
Comment: C: Estimation of RNA-seq protocol from bam files
4.8 years ago by JJ ▴ 710
0
votes
0
replies
1.0k
views
Comment: C: Estimation of RNA-seq protocol from bam files
4.8 years ago by JJ ▴ 710
3
votes
5
replies
1.0k
views
Estimation of RNA-seq protocol from bam files
RNA-Seq
updated 4.8 years ago by ▴ 150 • written 4.8 years ago by ▴ 710
3
votes
1
reply
1.2k
views
RNAseq recommendations / terms read pairs vs. reads for paired end experiments
RNA-Seq
updated 5.0 years ago by ★ 1.6k • written 5.0 years ago by ▴ 710
0
votes
0
replies
1.4k
views
Answer: A: Do all samples in SRA have a corresponding sample in BioSample?
5.1 years ago by JJ ▴ 710
0
votes
0
replies
2.3k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
5.1 years ago by JJ ▴ 710
0
votes
0
replies
2.3k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
5.1 years ago by JJ ▴ 710
4
votes
6
replies
2.3k
views
Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
RNA-seq
updated 5.1 years ago by ▴ 580 • written 5.1 years ago by ▴ 710
0
votes
0
replies
2.3k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
5.1 years ago by JJ ▴ 710
0
votes
1
reply
4.2k
views
Comment: C: TCGA CNV data - immensely different results depending on data source
5.3 years ago by JJ ▴ 710
3
votes
5
replies
4.2k
views
TCGA CNV data - immensely different results depending on data source
genome CNV TCGA
5.3 years ago by JJ ▴ 710
6
votes
15
replies
7.7k
views
Compute Phylogenetic Trees Using Snps Data (VCF files)
SNP
updated 5.6 years ago by ▴ 60 • written 6.4 years ago by ▴ 710
0
votes
0
replies
1.5k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
5.7 years ago by JJ ▴ 710
0
votes
1
reply
1.5k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
5.7 years ago by JJ ▴ 710
5
votes
4
replies
1.5k
views
Pathway analysis with co-variates for RNA-seq data
RNA-Seq
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 710
0
votes
0
replies
765
views
Help with Designing an Approach for Biomarker Signature Generation
RNA-Seq gene
5.7 years ago by JJ ▴ 710
0
votes
0
replies
3.9k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
5.8 years ago by JJ ▴ 710
0
votes
1
reply
3.9k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
5.8 years ago by JJ ▴ 710
3
votes
4
replies
3.9k
views
SRA and the relationship between biosamples, experiments and runs
sequencing
updated 5.8 years ago by 13k • written 5.8 years ago by ▴ 710
0
votes
2
replies
23k
views
Comment: C: Calculation of VAF (variant allele frequency)
5.8 years ago by JJ ▴ 710
14
votes
4
replies
23k
views
Calculation of VAF (variant allele frequency)
sequencing
updated 2.0 years ago by ▴ 40 • written 5.8 years ago by ▴ 710
0
votes
0
replies
2.6k
views
Comment: C: Error using Tabix
5.8 years ago by JJ ▴ 710
0
votes
0
replies
4.0k
views
Comment: C: VCF file (annotated with snpeff) to MAF
5.8 years ago by JJ ▴ 710
0
votes
0
replies
1.1k
views
Comment: C: Genome and transcriptome analyses in yeast
6.1 years ago by JJ ▴ 710
0
votes
2
replies
1.1k
views
Genome and transcriptome analyses in yeast
SNP rna-seq sequencing
6.1 years ago by JJ ▴ 710
0
votes
1
reply
7.7k
views
Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.1 years ago by JJ ▴ 710
1
vote
0
replies
983
views
Is there a tool that can identify longer insertions using genome resequencing data?
genome alignment
6.1 years ago by JJ ▴ 710
4
votes
2
replies
1.4k
views
Best state-of-the-art tool for ab initio-based gene prediction / annotation of genome assemblies
Assembly
6.1 years ago by JJ ▴ 710
0
votes
0
replies
2.8k
views
Comment: C: How many Mio reads are recommended for RNA-sequencing experiments in yeast?
6.1 years ago by JJ ▴ 710
1
vote
2
replies
2.8k
views
How many Mio reads are recommended for RNA-sequencing experiments in yeast?
RNA-Seq
updated 6.1 years ago by ★ 2.6k • written 6.1 years ago by ▴ 710
0
votes
1
reply
2.2k
views
How can I perform DE analysis for GRO-seq data between conditions?
GRO-seq RNA-Seq
updated 6.3 years ago by ★ 18k • written 6.3 years ago by ▴ 710
0
votes
0
replies
2.2k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
6.3 years ago by JJ ▴ 710
0
votes
1
reply
2.2k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
6.3 years ago by JJ ▴ 710
0
votes
1
reply
2.2k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
6.3 years ago by JJ ▴ 710
9
votes
7
replies
2.2k
views
How to evaluate a biomarker signature in an independent dataset
RNA-Seq
6.3 years ago by JJ ▴ 710
0
votes
0
replies
2.0k
views
Comment: C: Tools for Biomarker Signature Generation
6.3 years ago by JJ ▴ 710
0
votes
1
reply
2.0k
views
Comment: C: Tools for Biomarker Signature Generation
6.3 years ago by JJ ▴ 710
0
votes
1
reply
8.8k
views
Comment: C: Resources for gene signature creation
6.3 years ago by JJ ▴ 710
0
votes
1
reply
8.8k
views
Comment: C: Resources for gene signature creation
6.3 years ago by JJ ▴ 710
2
votes
4
replies
2.0k
views
Tools for Biomarker Signature Generation
RNA-Seq
6.3 years ago by JJ ▴ 710
0
votes
1
reply
8.8k
views
Comment: C: Resources for gene signature creation
6.3 years ago by JJ ▴ 710
0
votes
0
replies
3.4k
views
Answer: A: GRCh38 Annotation for non coding RNA (e.g. miRNA)
6.3 years ago by JJ ▴ 710
164 results • Page 1 of 4
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