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Comment: C: Confusion regarding generating phylogenetic tree from snp data
6.6 years ago by JJ ▴ 750
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0
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8.1k
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Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.7 years ago by JJ ▴ 750
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1
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8.1k
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Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.7 years ago by JJ ▴ 750
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1
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8.1k
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Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.7 years ago by JJ ▴ 750
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8.1k
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Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.7 years ago by JJ ▴ 750
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0
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1.9k
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Comment: C: How can I compute if the co-occurrence of two TFBSs within a certain width in al
6.8 years ago by JJ ▴ 750
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0
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1.9k
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Comment: C: How can I compute if the co-occurrence of two TFBSs within a certain width in al
6.8 years ago by JJ ▴ 750
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4
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1.9k
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How can I compute if the co-occurrence of two TFBSs within a certain width in all promoters is larger than by chance?
sequence genome
updated 6.8 years ago by 15k • written 6.8 years ago by ▴ 750
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2.3k
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Comment: C: Calculate if the co-occurring of two TFBSs is higher than one would expect by ch
6.8 years ago by JJ ▴ 750
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0
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2.3k
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Comment: C: Calculate if the co-occurring of two TFBSs is higher than one would expect by ch
6.8 years ago by JJ ▴ 750
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0
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2.3k
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Comment: C: Calculate if the co-occurring of two TFBSs is higher than one would expect by ch
6.8 years ago by JJ ▴ 750
0
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1
reply
2.3k
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Comment: C: Calculate if the co-occurring of two TFBSs is higher than one would expect by ch
6.8 years ago by JJ ▴ 750
0
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3
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2.3k
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Comment: C: Calculate if the co-occurring of two TFBSs is higher than one would expect by ch
6.8 years ago by JJ ▴ 750
7
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11
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2.3k
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Calculate if the co-occurring of two TFBSs is higher than one would expect by chance within 1000bp of each other
sequence genome
updated 6.8 years ago by 36k • written 6.8 years ago by ▴ 750
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1
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2.0k
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Comment: C: Are maps of regulatory regions available for hg38?
6.8 years ago by JJ ▴ 750
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1
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2.0k
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Comment: C: Are maps of regulatory regions available for hg38?
6.8 years ago by JJ ▴ 750
5
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6
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2.0k
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Are maps of regulatory regions available for hg38?
sequence
updated 6.8 years ago by 87k • written 6.8 years ago by ▴ 750
1
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0
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3.2k
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Comment: C: Convert binding site formats from different databases and compare the motifs - a
6.8 years ago by JJ ▴ 750
3
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2
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3.2k
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Convert binding site formats from different databases and compare the motifs - any tools available?
sequence
6.8 years ago by JJ ▴ 750
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1
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3.8k
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Answer: A: Understanding VCF abbreviations
6.8 years ago by JJ ▴ 750
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0
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3.4k
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Comment: C: Scanning for TFBSs of known motifs in all human promoters
6.8 years ago by JJ ▴ 750
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0
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2.0k
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Answer: A: Extract number of SNPs for any given gene
6.8 years ago by JJ ▴ 750
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0
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2.4k
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Answer: A: HISAT2-StringTie-CuffDiff "Sam file doesn't appear to be correctly sorted"
6.8 years ago by JJ ▴ 750
1
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888
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Answer: A: sequence for colorectal cancer
6.8 years ago by JJ ▴ 750
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1
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1.6k
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Comment: C: Need publicly available raw RNA-seq data generated by human cell lines
6.8 years ago by JJ ▴ 750
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0
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1.5k
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Comment: C: How should a query a gene type in multiple genomes?
6.8 years ago by JJ ▴ 750
0
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1
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3.4k
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Comment: C: Scanning for TFBSs of known motifs in all human promoters
6.8 years ago by JJ ▴ 750
0
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0
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3.4k
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Comment: C: Scanning for TFBSs of known motifs in all human promoters
6.8 years ago by JJ ▴ 750
11
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9
replies
3.4k
views
Scanning for TFBSs of known motifs in all human promoters
genome sequence
updated 6.8 years ago by 36k • written 6.8 years ago by ▴ 750
1
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1
reply
1.5k
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Answer: A: How should a query a gene type in multiple genomes?
6.8 years ago by JJ ▴ 750
0
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0
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2.6k
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Answer: A: extracting sequence from fast file
6.8 years ago by JJ ▴ 750
1
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0
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2.4k
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Comment: C: Gene Expression data and variants from the same fastqc raw file
6.8 years ago by JJ ▴ 750
2
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1
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2.4k
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Answer: A: Gene Expression data and variants from the same fastqc raw file
6.8 years ago by JJ ▴ 750
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0
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3.9k
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Comment: C: What are the requirements to use data generated in other microarray experiments
6.8 years ago by JJ ▴ 750
0
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0
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4.2k
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Comment: C: Deseq2 batch effect design issue
6.8 years ago by JJ ▴ 750
1
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1
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4.2k
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Answer: A: Deseq2 batch effect design issue
6.8 years ago by JJ ▴ 750
0
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0
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1.5k
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Answer: A: microarray data analysis
6.8 years ago by JJ ▴ 750
1
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1
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3.9k
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Answer: A: What are the requirements to use data generated in other microarray experiments
6.8 years ago by JJ ▴ 750
0
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0
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2.7k
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Answer: A: Where can I download homo sapiens gene locations file including ensembl gene id,
6.8 years ago by JJ ▴ 750
1
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0
replies
1.5k
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Comment: C: Tophat output problem
6.8 years ago by JJ ▴ 750
0
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1
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3.0k
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Comment: C: remove rrna from rna seq
6.8 years ago by JJ ▴ 750
0
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1
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3.0k
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Comment: C: remove rrna from rna seq
6.8 years ago by JJ ▴ 750
0
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1
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3.8k
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Comment: C: Retrieve promoter sequences of all human genes
6.8 years ago by JJ ▴ 750
0
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0
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3.8k
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Comment: C: Retrieve promoter sequences of all human genes
6.8 years ago by JJ ▴ 750
5
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7
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3.8k
views
Retrieve promoter sequences of all human genes
sequence
updated 6.8 years ago by 149k • written 6.9 years ago by ▴ 750
0
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1
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3.8k
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Comment: C: Retrieve promoter sequences of all human genes
6.8 years ago by JJ ▴ 750
0
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1
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2.9k
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Comment: C: FeatureCounts fails to count fragments instead of reads
6.9 years ago by JJ ▴ 750
0
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1
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2.9k
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Answer: A: FeatureCounts fails to count fragments instead of reads
6.9 years ago by JJ ▴ 750
0
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0
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26k
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Comment: C: Is there a tool that sorts gtf files?
6.9 years ago by JJ ▴ 750
2
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0
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26k
views
Comment: C: Is there a tool that sorts gtf files?
6.9 years ago by JJ ▴ 750
164 results • Page 2 of 4
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