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Integration of paired and single-end SRA
Paired-end Single-end VCF Resequencing
updated 9 weeks ago by 20k • written 9 weeks ago by ▴ 300
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515
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Comment: Comment: merge overlaps and remove non overlap genomic windows
6 months ago by reza ▴ 300
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1
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515
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Comment: Comment: merge overlaps and remove non overlap genomic windows
6 months ago by reza ▴ 300
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4
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515
views
merge overlaps and remove non overlap genomic windows
BED intersection overlap
6 months ago by reza ▴ 300
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0
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728
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Comment: Comment: VCF conservation into Treemix
10 months ago by reza ▴ 300
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0
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1.4k
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Comment: Comment: BWA Index Referencing Failed. Possible Reason and Solutions?
10 months ago by reza ▴ 300
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0
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482
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bootstraped treemix show no migration event
Treemix Bootstrap
11 months ago by reza ▴ 300
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2
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728
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VCF conservation into Treemix
Treemix Plink VCF
10 months ago by reza ▴ 300
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0
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985
views
Comment: Comment: how to filter a multi-sample VCF file based on 0/0 genotype numbers
15 months ago by reza ▴ 300
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1
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985
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Comment: Comment: how to filter a multi-sample VCF file based on 0/0 genotype numbers
15 months ago by reza ▴ 300
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4
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985
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how to filter a multi-sample VCF file based on 0/0 genotype numbers
genotype VCF CNV
15 months ago by reza ▴ 300
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2
replies
1.3k
views
pooled-heterozygosity calculation
VCF Population-Genetics WGS Selective-sweep
updated 17 months ago by • 0 • written 3.1 years ago by ▴ 300
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1
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880
views
Prolem with Dsuite program for introgression test
Introgression Dsuite
updated 23 months ago by • 0 • written 2.2 years ago by ▴ 300
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0
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459
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How to determine a threshold for fdm parameter to identify introgressed regions on genome
WGS Introgression Dsuite
2.2 years ago by reza ▴ 300
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1
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942
views
ERROR: Variant physical position must be monotonically increasing
XPEHH selscan
updated 2.9 years ago by 4.5k • written 2.9 years ago by ▴ 300
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0
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719
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different windows and snps for same vcf file while i calculate genetic diversity using vcftools
vcftools pi
2.9 years ago by reza ▴ 300
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0
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443
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Pooled-heterozigosity (SECTION2)
Hp VCF Pooled_Heterozygosity
3.0 years ago by reza ▴ 300
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0
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1.4k
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Comment: Comment: Annotation of vcftools fst output using GTF or GFF
3.0 years ago by reza ▴ 300
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1
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1.4k
views
Comment: Comment: Annotation of vcftools fst output using GTF or GFF
3.0 years ago by reza ▴ 300
2
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4
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1.4k
views
Annotation of vcftools fst output using GTF or GFF
fst vcftools annotation GTF
3.0 years ago by reza ▴ 300
1
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1
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3.3k
views
Comment: Comment: Bam file depth of coverage and statstics
3.0 years ago by reza ▴ 300
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1
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3.3k
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Comment: Comment: Bam file depth of coverage and statstics
3.0 years ago by reza ▴ 300
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0
replies
4.1k
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Comment: Comment: GATK-Allele frequency
3.0 years ago by reza ▴ 300
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1
reply
3.3k
views
Comment: Comment: Bam file depth of coverage and statstics
3.0 years ago by reza ▴ 300
1
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1
reply
2.0k
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Comment: Comment: ABBA BABA test for two population
3.1 years ago by reza ▴ 300
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4
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2.0k
views
ABBA BABA test for two population
introgression genetics Population ABAB-BABA
updated 3.1 years ago by ▴ 100 • written 3.1 years ago by ▴ 300
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0
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1.3k
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Comment: Comment: How to filter GATK vcf file using other programs
3.2 years ago by reza ▴ 300
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1
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1.3k
views
Comment: Comment: How to filter GATK vcf file using other programs
3.2 years ago by reza ▴ 300
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4
replies
1.3k
views
How to filter GATK vcf file using other programs
VCF Filtration GATK
3.2 years ago by reza ▴ 300
1
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1
reply
1.3k
views
Adding read groups to mark duplicated bam file
Picard GATK
updated 3.2 years ago by ★ 1.2k • written 3.2 years ago by ▴ 300
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0
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2.0k
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Comment: Comment: how to removed the first two nucleotides from a fastq file (single-end)
3.5 years ago by reza ▴ 300
1
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0
replies
1.5k
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Comment: Comment: Problem with limma in microarray analysis
3.5 years ago by reza ▴ 300
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1
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1.5k
views
Comment: Comment: Problem with limma in microarray analysis
3.5 years ago by reza ▴ 300
0
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1
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1.5k
views
Comment: Comment: Problem with limma in microarray analysis
3.5 years ago by reza ▴ 300
5
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6
replies
1.5k
views
Problem with limma in microarray analysis
limma microarray R
3.5 years ago by reza ▴ 300
1
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7
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14k
views
A problem with download SRA using SRA toolkit
SRAtoolkit NCBI SRA
updated 17 months ago by 44k • written 4.7 years ago by ▴ 300
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1
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2.1k
views
Comment: Comment: big loss after markduplication
3.6 years ago by reza ▴ 300
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0
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2.1k
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Comment: Comment: big loss after markduplication
3.6 years ago by reza ▴ 300
0
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0
replies
2.1k
views
Comment: Comment: big loss after markduplication
3.6 years ago by reza ▴ 300
0
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1
reply
2.1k
views
Comment: Comment: big loss after markduplication
3.6 years ago by reza ▴ 300
0
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1
reply
2.1k
views
Comment: Comment: big loss after markduplication
3.6 years ago by reza ▴ 300
1
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10
replies
2.1k
views
big loss after markduplication
MarkDuplicates Re-sequencing Picard
updated 3.6 years ago by ▴ 150 • written 3.6 years ago by ▴ 300
1
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1
reply
834
views
variant calling using masked reference genome
Bowtie2 Reference Genome Variant Calling
3.7 years ago by reza ▴ 300
0
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1
reply
1.6k
views
Comment: C: error in running Combat function
3.9 years ago by reza ▴ 300
0
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1
reply
1.6k
views
Comment: C: error in running Combat function
3.9 years ago by reza ▴ 300
0
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1
reply
1.6k
views
Comment: C: error in running Combat function
3.9 years ago by reza ▴ 300
0
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6
replies
1.6k
views
error in running Combat function
R sva Combat R studio
3.9 years ago by reza ▴ 300
0
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0
replies
773
views
Meta-Analysis of Microarray data (Afyymetrix)
Meta-Analysis Microarray Affymetrix R
4.3 years ago by reza ▴ 300
0
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0
replies
620
views
extraction of scaffolds from SOAPdenovo output
next-gen Assembly soapdenovo scaffold
4.4 years ago by reza ▴ 300
0
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1
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14k
views
Comment: C: A problem with download SRA using SRA toolkit
4.7 years ago by reza ▴ 300
157 results • Page 1 of 4
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