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Comment: C: Obtain one vcf file of shared SNPs from input files with different samples using
updated 4.9 years ago by 44k • written 7.3 years ago by ▴ 300
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2
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879
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Comment: C: Multiple genome comparison for new genetic markers
5.0 years ago by reza ▴ 300
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1
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1.3k
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Comment: C: Issue with Bowtie2 mapping
5.3 years ago by reza ▴ 300
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1.3k
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Comment: C: Issue with Bowtie2 mapping
5.3 years ago by reza ▴ 300
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7
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1.3k
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Issue with Bowtie2 mapping
Bowtie2 Trimmomatic mapping Paired-End
5.3 years ago by reza ▴ 300
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1
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1.3k
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Comment: C: Issue with Bowtie2 mapping
5.3 years ago by reza ▴ 300
4
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3
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2.7k
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whole genome alignment using nucmer
Assembly alignment genome nucmer
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 300
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1.6k
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Comment: C: variant calling in mitochondria using whole genome sequencing
5.9 years ago by reza ▴ 300
1
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2
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1.6k
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variant calling in mitochondria using whole genome sequencing
mitochondria SNP
5.9 years ago by reza ▴ 300
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1
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3.3k
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Comment: C: several effect for one SNP annotated by SNPeff
5.9 years ago by reza ▴ 300
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8
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3.3k
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several effect for one SNP annotated by SNPeff
SNPeff annotation SNP
5.9 years ago by reza ▴ 300
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1
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3.3k
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Comment: C: several effect for one SNP annotated by SNPeff
5.9 years ago by reza ▴ 300
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3.3k
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Comment: C: How can I call somatic CNV in tumor samples with no reference (control) samples?
5.9 years ago by reza ▴ 300
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1
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3.3k
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Comment: C: several effect for one SNP annotated by SNPeff
5.9 years ago by reza ▴ 300
0
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1
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3.3k
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Comment: C: how to extract gene name for LOF (loss of function) variants
6.3 years ago by reza ▴ 300
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1
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3.3k
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Comment: C: how to extract gene name for LOF (loss of function) variants
6.3 years ago by reza ▴ 300
6
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9
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3.3k
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how to extract gene name for LOF (loss of function) variants
snpEff LOF variants
updated 6.3 years ago by 164k • written 6.3 years ago by ▴ 300
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0
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2.3k
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Comment: C: how to extract LOF variants from vcf file?
6.3 years ago by reza ▴ 300
0
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1
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2.3k
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Comment: C: how to extract LOF variants from vcf file?
6.4 years ago by reza ▴ 300
2
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4
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2.3k
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how to extract LOF variants from vcf file?
variants vcf Loss function variants
6.4 years ago by reza ▴ 300
6
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11
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4.1k
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number of functions is more than namber of variants in snpEff's output
snp snpEff next-gen
updated 6.5 years ago by 16k • written 7.7 years ago by ▴ 300
0
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0
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2.7k
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Comment: C: Correct Trimmomatic adapter sequence file to use?
6.6 years ago by reza ▴ 300
0
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0
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1.2k
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Comment: C: how to retrieve sequences from genome
6.6 years ago by reza ▴ 300
2
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4
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4.0k
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workflow for variant calling using GATK in multiple paired end reads
snp next-gen
updated 6.7 years ago by ▴ 10 • written 7.9 years ago by ▴ 300
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0
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4.3k
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Comment: C: CNV detection using BAM file
6.7 years ago by reza ▴ 300
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0
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4.3k
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Comment: C: CNV detection using BAM file
6.7 years ago by reza ▴ 300
6
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8
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4.3k
views
CNV detection using BAM file
CNV BAM
updated 6.7 years ago by ★ 2.8k • written 6.7 years ago by ▴ 300
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1
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4.3k
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Comment: C: CNV detection using BAM file
6.7 years ago by reza ▴ 300
0
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1
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4.3k
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Comment: C: CNV detection using BAM file
6.7 years ago by reza ▴ 300
0
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1
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3.0k
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Comment: C: GATK Variant calling
6.9 years ago by reza ▴ 300
0
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2
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5.1k
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.9 years ago by reza ▴ 300
0
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0
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5.1k
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.9 years ago by reza ▴ 300
0
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1
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5.1k
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.9 years ago by reza ▴ 300
0
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10
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5.1k
views
segmentation fault (core dumped) error when using BWA and BOWTIE
bwa bowtie software error
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 300
4
votes
8
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3.2k
views
receive GC-content profile for a given window-size and splitting multi fasta file into separate fasta files by contigs name for running control-free
splitting fasta
updated 7.0 years ago by 147k • written 7.0 years ago by ▴ 300
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0
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3.2k
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Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
updated 7.0 years ago by 147k • written 7.0 years ago by ▴ 300
0
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2
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3.2k
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Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
7.0 years ago by reza ▴ 300
0
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0
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1.7k
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how to create target region track for CNV detection using Biomedical genomics workbench
CLC CNV target region
7.0 years ago by reza ▴ 300
5
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2
replies
3.4k
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change fastq header
fastq
updated 7.0 years ago by 164k • written 7.0 years ago by ▴ 300
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0
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2.3k
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Comment: C: how to download all bacterial complete genome from RefSeq?
7.1 years ago by reza ▴ 300
3
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3
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2.3k
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how to download all bacterial complete genome from RefSeq?
sequence genome bactria
updated 7.1 years ago by 44k • written 7.1 years ago by ▴ 300
0
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0
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2.1k
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Comment: C: Extract all paired reads from sam file
7.2 years ago by reza ▴ 300
0
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0
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3.1k
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Comment: C: Workflow for annotating repeat elements
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 300
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1
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17k
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Comment: C: Bioawk - Fasta, Fastq, Sam, Bed, Gff Aware Awk Programming
7.3 years ago by reza ▴ 300
0
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1
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2.5k
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how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis
snp non-synonymous GO
7.3 years ago by reza ▴ 300
0
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0
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6.8k
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Comment: C: building database in snpEff
7.4 years ago by reza ▴ 300
1
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0
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3.4k
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Comment: C: Should unplaced scaffolds in reference genome be used to map newly sequenced gen
7.4 years ago by reza ▴ 300
0
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1
reply
6.8k
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Comment: C: building database in snpEff
7.4 years ago by reza ▴ 300
0
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0
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7.7k
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Comment: C: How to determine percentage missing genotypes in VCF/BCF?
7.4 years ago by reza ▴ 300
0
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0
replies
3.2k
views
Comment: C: Functional annotation of SNPs and genes containing nonsynonymous SNPs
7.4 years ago by reza ▴ 300
157 results • Page 2 of 4
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