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6
votes
4
replies
6.3k
views
miRDeep2 output scores
miRDeep2 NGS miRNAs DE rna-seq
updated 2.7 years ago by • 0 • written 8.7 years ago by ▴ 180
0
votes
1
reply
898
views
Comment: Comment: Insert SNPs in FASTA sequence given position file
3.3 years ago by Emilio Marmol ▴ 180
0
votes
3
replies
898
views
Insert SNPs in FASTA sequence given position file
snp python bed awk fasta
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 180
1
vote
2
replies
4.9k
views
Read Counts from miRDeep2 for posterior DE analysis
mirdeep2 RNA-Seq DE read counts miRNAs
updated 3.6 years ago by ▴ 160 • written 8.8 years ago by ▴ 180
0
votes
0
replies
739
views
Tool: A framework to prioritize miRNA-driven post-transcriptional signals using exonic and intronic regions of RNAseq data
post-transcriptional miRNA intron exon RNAseq
3.8 years ago by Emilio Marmol ▴ 180
3
votes
2
replies
919
views
Modify BED with poliregions
bash awk BED
updated 6.3 years ago by 166k • written 6.3 years ago by ▴ 180
1
vote
0
replies
9.6k
views
Answer: A: miRNA differential expression
6.3 years ago by Emilio Marmol ▴ 180
0
votes
0
replies
1.3k
views
Assesing Gene topology and connectivity
RNA-Seq gene co-expresion pathway topology
6.4 years ago by Emilio Marmol ▴ 180
0
votes
1
reply
1.5k
views
Answer: A: miRPara for novel miRNA discovery
6.4 years ago by Emilio Marmol ▴ 180
3
votes
0
replies
13k
views
Answer: A: STAR or Bowtie for small RNA seq?
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 180
0
votes
0
replies
2.8k
views
Comment: C: Comparing novel miRNAs from miRDeep2
6.4 years ago by Emilio Marmol ▴ 180
2
votes
1
reply
13k
views
Comment: C: STAR or Bowtie for small RNA seq?
6.4 years ago by Emilio Marmol ▴ 180
1
vote
1
reply
2.8k
views
Answer: A: Comparing novel miRNAs from miRDeep2
6.4 years ago by Emilio Marmol ▴ 180
0
votes
0
replies
2.0k
views
Answer: A: novel miRNA identification from sequence
6.4 years ago by Emilio Marmol ▴ 180
1
vote
1
reply
1.4k
views
RTqPCR Differential Expression with multivariate linnear models
R limma linnear model
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 180
1
vote
3
replies
1.8k
views
VCF sample fields output
vcf sample SNP
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 180
0
votes
1
reply
1.8k
views
Comment: C: VCF sample fields output
7.1 years ago by Emilio Marmol ▴ 180
5
votes
5
replies
3.7k
views
Query Genes within regions
biomaRt R bedtools query
updated 7.1 years ago by ★ 2.1k • written 7.1 years ago by ▴ 180
0
votes
1
reply
1.6k
views
Determining Expressed Probes in Microarray
Microarray Genes Probes Expressed
updated 7.2 years ago by 20 • written 7.2 years ago by ▴ 180
0
votes
0
replies
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
0
votes
1
reply
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
1
vote
0
replies
2.8k
views
Comment: C: differentially expressed miRNA
7.8 years ago by Emilio Marmol ▴ 180
2
votes
1
reply
2.8k
views
Answer: A: differentially expressed miRNA
7.8 years ago by Emilio Marmol ▴ 180
0
votes
1
reply
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
0
votes
0
replies
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
1
vote
1
reply
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
0
votes
0
replies
13k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.8 years ago by Emilio Marmol ▴ 180
3
votes
18
replies
13k
views
Difference between CPM and RPM for RNA-seq reada quantification
RNA-Seq miRNAs CPM RPM
updated 7.8 years ago by ★ 1.4k • written 7.8 years ago by ▴ 180
0
votes
1
reply
4.6k
views
Comment: C: miRNA-mRNA expression correlation
8.4 years ago by Emilio Marmol ▴ 180
0
votes
1
reply
4.6k
views
Comment: C: miRNA-mRNA expression correlation
8.4 years ago by Emilio Marmol ▴ 180
2
votes
7
replies
4.6k
views
miRNA-mRNA expression correlation
RNA-Seq R miRNA mRNA correlation
updated 8.4 years ago by 8.4k • written 8.4 years ago by ▴ 180
1
vote
1
reply
5.6k
views
Using limma for Differential Expression test
limma Differential Expression
updated 8.4 years ago by 20 • written 8.5 years ago by ▴ 180
0
votes
1
reply
3.2k
views
Trimming adapters from miRNA-seq
RNA-Seq microRNAs trimming adapter sequencing
8.9 years ago by Emilio Marmol ▴ 180
0
votes
0
replies
1.8k
views
Comment: C: Read fragments to trim
8.9 years ago by Emilio Marmol ▴ 180
0
votes
2
replies
1.8k
views
Read fragments to trim
RNA-Seq miRNA-seq cutadapt trimmomatic next-gen
8.9 years ago by Emilio Marmol ▴ 180
3
votes
7
replies
2.9k
views
Problem guessing what fastq from paired-end rna-seq is forward and what is reverse
RNA-Seq next-gen fastq forward reverse
8.9 years ago by Emilio Marmol ▴ 180
0
votes
2
replies
2.9k
views
Comment: A: Problem guessing what fastq from paired-end rna-seq is forward and what is rever
8.9 years ago by Emilio Marmol ▴ 180
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