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346
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Answer: Answer: Parsing BAM file per cell from Smart-Seq2 dataset
15 days ago by dsull ★ 7.3k
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314
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Answer: Answer: Salmon RNA-Seq transcript quantification
21 days ago by dsull ★ 7.3k
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0
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209
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Comment: Comment: Kallisto alignment with HPC (SLURM)
27 days ago by dsull ★ 7.3k
2
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0
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702
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Comment: Comment: What is the current state of the beef against UMAP/tSNE in the context of sc tra
4 weeks ago by dsull ★ 7.3k
2
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1
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702
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Answer: Answer: What is the current state of the beef against UMAP/tSNE in the context of sc tra
4 weeks ago by dsull ★ 7.3k
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1
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735
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
5 weeks ago by dsull ★ 7.3k
1
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1
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735
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Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
5 weeks ago by dsull ★ 7.3k
0
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0
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1.0k
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Comment: Comment: Which zUMIs output to use for differential gene expression?
6 weeks ago by dsull ★ 7.3k
0
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1
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800
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Comment: Comment: Snakemake config errors
7 weeks ago by dsull ★ 7.3k
2
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0
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460
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Comment: Comment: How to handle paired and unpaired reads in RNAseq pipeline
7 weeks ago by dsull ★ 7.3k
0
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1
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800
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Comment: Comment: Snakemake config errors
7 weeks ago by dsull ★ 7.3k
2
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1
reply
460
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Answer: Answer: How to handle paired and unpaired reads in RNAseq pipeline
7 weeks ago by dsull ★ 7.3k
1
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0
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956
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Comment: Comment: Preparation needed to get into Bioinformatic field
8 weeks ago by dsull ★ 7.3k
0
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1
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956
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Answer: Answer: Preparation needed to get into Bioinformatic field
8 weeks ago by dsull ★ 7.3k
3
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2
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794
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Answer: Answer: How well was the rRNA depletion for RNA-Seq experiments
8 weeks ago by dsull ★ 7.3k
0
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0
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525
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Comment: Comment: How to do allele specific expression analysis (ASE)
9 weeks ago by dsull ★ 7.3k
1
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2
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525
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Answer: Answer: How to do allele specific expression analysis (ASE)
9 weeks ago by dsull ★ 7.3k
2
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0
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1.4k
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Comment: Comment: STAR aligner - Is this still maintained?
10 weeks ago by dsull ★ 7.3k
0
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0
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724
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
3
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1
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724
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
1
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2
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724
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
3
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0
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894
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Answer: Answer: Premade RNA-seq pipeline or custom
11 weeks ago by dsull ★ 7.3k
0
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0
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796
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Comment: Comment: Sample-level demultiplex raw FASTQ file
12 weeks ago by dsull ★ 7.3k
1
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0
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2.8k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
3 months ago by dsull ★ 7.3k
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0
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2.8k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
3 months ago by dsull ★ 7.3k
0
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1
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2.8k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
3 months ago by dsull ★ 7.3k
1
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0
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2.8k
views
Comment: Comment: New Macbook M4 laptops (Pro vs Max)
3 months ago by dsull ★ 7.3k
1
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0
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624
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Answer: Answer: rRNA contamination in RNASeq fdata
3 months ago by dsull ★ 7.3k
2
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0
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524
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Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
3 months ago by dsull ★ 7.3k
1
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0
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340
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Answer: Answer: No change in quality score graph even after adapter removal
3 months ago by dsull ★ 7.3k
0
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0
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1.1k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
3 months ago by dsull ★ 7.3k
0
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1
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1.1k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
3 months ago by dsull ★ 7.3k
1
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0
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888
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
3 months ago by dsull ★ 7.3k
0
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0
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488
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Answer: Answer: Spatial correlation between two continuous variables
3 months ago by dsull ★ 7.3k
0
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1
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888
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
3 months ago by dsull ★ 7.3k
0
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0
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1.4k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
3 months ago by dsull ★ 7.3k
0
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1
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1.4k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
3 months ago by dsull ★ 7.3k
3
votes
1
reply
888
views
Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
3 months ago by dsull ★ 7.3k
0
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0
replies
686
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Answer: Answer: PossionDis method for identification of differentially expressed genes.
4 months ago by dsull ★ 7.3k
1
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0
replies
1.1k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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1
reply
1.1k
views
Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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1
reply
1.1k
views
Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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0
replies
507
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Comment: Comment: How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
4 months ago by dsull ★ 7.3k
1
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0
replies
741
views
Comment: Comment: Pre-pseudoalignment preprocessing
4 months ago by dsull ★ 7.3k
1
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1
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697
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Comment: Comment: alignment to human transcriptome with Bowtie2
5 months ago by dsull ★ 7.3k
0
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0
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1.1k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
5 months ago by dsull ★ 7.3k
1
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0
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985
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
5 months ago by dsull ★ 7.3k
0
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1
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1.6k
views
Comment: Comment: How to determine whether it is 10x data
5 months ago by dsull ★ 7.3k
3
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2
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985
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Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
5 months ago by dsull ★ 7.3k
0
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0
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690
views
Comment: Comment: How to count the number and proportion of different barcode combinations in DNA
updated 5 months ago by 45k • written 5 months ago by ★ 7.3k
762 results • Page 1 of 16
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