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Comment: Comment: High Malat-1 expression in single cell data
6 days ago by dsull ★ 6.0k
1
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1
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258
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
6 days ago by dsull ★ 6.0k
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852
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Comment: Comment: High Malat-1 expression in single cell data
10 days ago by dsull ★ 6.0k
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321
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Comment: Comment: How does gene length effect the number of reads mapped
10 days ago by dsull ★ 6.0k
2
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852
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Comment: Comment: High Malat-1 expression in single cell data
10 days ago by dsull ★ 6.0k
0
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1
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321
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Comment: Comment: How does gene length effect the number of reads mapped
10 days ago by dsull ★ 6.0k
1
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1
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257
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Answer: Answer: RNA-seq data for deep learning classification
11 days ago by dsull ★ 6.0k
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387
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Comment: Comment: What purposes can TPM values be used for?
11 days ago by dsull ★ 6.0k
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453
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Comment: Comment: How should I make kallisto indexes?
14 days ago by dsull ★ 6.0k
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453
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Comment: Comment: How should I make kallisto indexes?
14 days ago by dsull ★ 6.0k
0
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1
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453
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Answer: Answer: How should I make kallisto indexes?
14 days ago by dsull ★ 6.0k
1
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852
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Comment: Comment: High Malat-1 expression in single cell data
14 days ago by dsull ★ 6.0k
0
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0
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478
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Comment: Comment: What does it mean single base resolution in sequencing?
14 days ago by dsull ★ 6.0k
1
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1
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852
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Answer: Answer: High Malat-1 expression in single cell data
14 days ago by dsull ★ 6.0k
0
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1
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478
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Comment: Comment: What does it mean single base resolution in sequencing?
14 days ago by dsull ★ 6.0k
0
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0
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478
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Answer: Answer: What does it mean single base resolution in sequencing?
14 days ago by dsull ★ 6.0k
1
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1
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2.1k
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Comment: Comment: NGS forensics: how to know if data is fabricated
15 days ago by dsull ★ 6.0k
2
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1
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2.1k
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Comment: Comment: NGS forensics: how to know if data is fabricated
15 days ago by dsull ★ 6.0k
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0
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785
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Comment: Comment: Heatmap and rna-seq
16 days ago by dsull ★ 6.0k
1
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1
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785
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Answer: Answer: Heatmap and rna-seq
16 days ago by dsull ★ 6.0k
2
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1
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367
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
17 days ago by dsull ★ 6.0k
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0
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586
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Comment: Comment: To get p-values for the TPM
18 days ago by dsull ★ 6.0k
1
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1
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586
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Comment: Comment: To get p-values for the TPM
19 days ago by dsull ★ 6.0k
1
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2
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586
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Answer: Answer: To get p-values for the TPM
19 days ago by dsull ★ 6.0k
0
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1
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588
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
19 days ago by dsull ★ 6.0k
2
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1
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588
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
20 days ago by dsull ★ 6.0k
0
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0
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381
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Answer: Answer: How to establish haplotype-specific gene expression levels
17 days ago by dsull ★ 6.0k
1
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0
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312
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Comment: Comment: from row count to tpm
21 days ago by dsull ★ 6.0k
1
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204
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
27 days ago by dsull ★ 6.0k
1
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1
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572
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
4 weeks ago by dsull ★ 6.0k
1
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1
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572
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
4 weeks ago by dsull ★ 6.0k
0
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1
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381
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Comment: Comment: How to to establish haplotype-specific gene expression levels
4 weeks ago by dsull ★ 6.0k
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0
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294
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Comment: Comment: rRNA depletion of RIP-seq samples
4 weeks ago by dsull ★ 6.0k
1
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1
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224
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
5 weeks ago by dsull ★ 6.0k
1
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0
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285
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
5 weeks ago by dsull ★ 6.0k
0
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0
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564
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Comment: Comment: Installing Cell Ranger
6 weeks ago by dsull ★ 6.0k
0
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0
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415
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Comment: Comment: DESeq2 and normalization
6 weeks ago by dsull ★ 6.0k
0
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0
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589
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Comment: Comment: STAR aligner options
6 weeks ago by dsull ★ 6.0k
1
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0
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907
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
6 weeks ago by dsull ★ 6.0k
0
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1
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589
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Comment: Comment: STAR aligner options
6 weeks ago by dsull ★ 6.0k
1
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1
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415
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Answer: Answer: DESeq2 and normalization
6 weeks ago by dsull ★ 6.0k
0
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0
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by dsull ★ 6.0k
0
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1
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by dsull ★ 6.0k
1
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1
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758
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
7 weeks ago by dsull ★ 6.0k
1
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1
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758
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
7 weeks ago by dsull ★ 6.0k
0
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0
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252
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Comment: Comment: DEG (Differential expression gene) analysis
7 weeks ago by dsull ★ 6.0k
0
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1
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252
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Answer: Answer: DEG (Differential expression gene) analysis
7 weeks ago by dsull ★ 6.0k
3
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1
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380
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Comment: Comment: Average expression of a sample in single-cell data
7 weeks ago by dsull ★ 6.0k
1
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0
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411
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Answer: Answer: scRNAseq normalization
7 weeks ago by dsull ★ 6.0k
0
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0
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166
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Answer: Answer: STAR --sjdbGTFfile in alignment step
8 weeks ago by dsull ★ 6.0k
621 results • Page 1 of 13
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