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Comment: Comment: I encountered a problem while using Mageck to analysis CRISPR screen data
3 months ago by dsull ★ 6.9k
2
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597
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Comment: Comment: RNA seq mapping
3 months ago by dsull ★ 6.9k
2
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312
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Answer: Answer: extracting cell specific reads from cellranger BAM output file
3 months ago by dsull ★ 6.9k
2
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633
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Comment: Comment: how to calculate correlations between sparse data
3 months ago by dsull ★ 6.9k
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633
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Comment: Comment: how to calculate correlations between sparse data
3 months ago by dsull ★ 6.9k
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1
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807
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Comment: Comment: Weird insert size distribution plot
3 months ago by dsull ★ 6.9k
2
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324
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Comment: Comment: Understanding the Principle and Mechanism of K-mer Alignment in Bioinformatics
updated 3 months ago by 147k • written 3 months ago by ★ 6.9k
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825
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
4 months ago by dsull ★ 6.9k
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1
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825
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
4 months ago by dsull ★ 6.9k
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1
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825
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
4 months ago by dsull ★ 6.9k
1
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1
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825
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
4 months ago by dsull ★ 6.9k
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464
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
4 months ago by dsull ★ 6.9k
2
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1.2k
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Comment: Comment: How to improve a bioinformatics study and paper so that it is not considered "to
4 months ago by dsull ★ 6.9k
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1
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1.2k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
4 months ago by dsull ★ 6.9k
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361
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Answer: Answer: Fragment size of published single end RNAseq data
4 months ago by dsull ★ 6.9k
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1
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703
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
4 months ago by dsull ★ 6.9k
2
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1
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316
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Answer: Answer: kb count -x parameter - what are the three parts?
4 months ago by dsull ★ 6.9k
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837
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Comment: Comment: 10X #3' RNA seq - How is strandedness determined?
4 months ago by dsull ★ 6.9k
2
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0
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336
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
4 months ago by dsull ★ 6.9k
2
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1
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475
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
4 months ago by dsull ★ 6.9k
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2
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1.4k
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Answer: Answer: RNA STAR and trimming
4 months ago by dsull ★ 6.9k
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0
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970
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Answer: Answer: Conversion of Gene Name to Ensembl ID
4 months ago by dsull ★ 6.9k
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1
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1.4k
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Comment: Comment: RNA STAR and trimming
4 months ago by dsull ★ 6.9k
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0
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678
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Comment: Comment: DESeq2 for DE analysis of proteins
4 months ago by dsull ★ 6.9k
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1
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678
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Comment: Comment: DESeq2 for DE analysis of proteins
4 months ago by dsull ★ 6.9k
0
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1
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678
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Answer: Answer: DESeq2 for DE analysis of proteins
4 months ago by dsull ★ 6.9k
2
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0
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521
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Comment: Comment: gene ids do not have corresponding valid gene names kallisto bus tools
4 months ago by dsull ★ 6.9k
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0
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1.4k
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Comment: Comment: RNA STAR and trimming
4 months ago by dsull ★ 6.9k
2
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1
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521
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
4 months ago by dsull ★ 6.9k
1
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1
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495
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Comment: Comment: indexing the drosophila genome for kallisto
4 months ago by dsull ★ 6.9k
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1
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495
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Answer: Answer: indexing the drosophila genome for kallisto
4 months ago by dsull ★ 6.9k
1
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0
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399
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Answer: Answer: STAR Index error
4 months ago by dsull ★ 6.9k
2
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3.0k
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Comment: Comment: Why it is not use UMIs for RNA-seq?
4 months ago by dsull ★ 6.9k
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0
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389
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Comment: Comment: Changing existing identifiers in RNASeq data to gene names
5 months ago by dsull ★ 6.9k
1
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1
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1.8k
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Comment: Comment: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
5 months ago by dsull ★ 6.9k
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645
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Comment: Comment: filter reads based on mapped length
5 months ago by dsull ★ 6.9k
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1
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643
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
5 months ago by dsull ★ 6.9k
0
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1
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643
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
5 months ago by dsull ★ 6.9k
4
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2
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638
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
5 months ago by dsull ★ 6.9k
0
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1
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622
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
5 months ago by dsull ★ 6.9k
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0
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385
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
5 months ago by dsull ★ 6.9k
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0
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526
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Comment: Comment: Detecting a virus in RNA-Seq Data
5 months ago by dsull ★ 6.9k
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0
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480
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Comment: Comment: Can I go from kallisto results to SEURAT directly
5 months ago by dsull ★ 6.9k
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0
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331
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Comment: Comment: Hybrid ScRNA Seq genome (transcriptome
5 months ago by dsull ★ 6.9k
1
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1
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432
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Comment: Comment: single nucleus RNA seq processing pipeline questions
5 months ago by dsull ★ 6.9k
2
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1
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499
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Comment: Comment: Differential gene expression
5 months ago by dsull ★ 6.9k
2
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597
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Comment: Comment: Basic question about lncRNA identification
5 months ago by dsull ★ 6.9k
2
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0
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562
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Comment: Comment: FASTQ header correction to remove .1 and .2 from paired end - SRA files
5 months ago by dsull ★ 6.9k
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0
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434
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
5 months ago by dsull ★ 6.9k
1
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1
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608
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Comment: Comment: Are there instutions that allow to use their hpc without charge?
5 months ago by dsull ★ 6.9k
723 results • Page 2 of 15
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