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Comment: Comment: I encountered a problem while using Mageck to analysis CRISPR screen data
8 months ago by dsull ★ 7.4k
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870
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Comment: Comment: RNA seq mapping
8 months ago by dsull ★ 7.4k
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541
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Answer: Answer: extracting cell specific reads from cellranger BAM output file
9 months ago by dsull ★ 7.4k
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1.2k
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Comment: Comment: how to calculate correlations between sparse data
9 months ago by dsull ★ 7.4k
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1.2k
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Comment: Comment: how to calculate correlations between sparse data
9 months ago by dsull ★ 7.4k
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1.3k
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Comment: Comment: Weird insert size distribution plot
9 months ago by dsull ★ 7.4k
2
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514
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Comment: Comment: Understanding the Principle and Mechanism of K-mer Alignment in Bioinformatics
updated 9 months ago by 151k • written 9 months ago by ★ 7.4k
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1.4k
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
9 months ago by dsull ★ 7.4k
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1
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1.4k
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
9 months ago by dsull ★ 7.4k
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1.4k
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
9 months ago by dsull ★ 7.4k
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1.4k
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Comment: Comment: Kallisto - Effect of Kmer size on quantification?
9 months ago by dsull ★ 7.4k
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708
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
9 months ago by dsull ★ 7.4k
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2.4k
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Comment: Comment: How to improve a bioinformatics study and paper so that it is not considered "to
9 months ago by dsull ★ 7.4k
5
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1
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2.4k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
9 months ago by dsull ★ 7.4k
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549
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Answer: Answer: Fragment size of published single end RNAseq data
9 months ago by dsull ★ 7.4k
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1.1k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
9 months ago by dsull ★ 7.4k
2
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530
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Answer: Answer: kb count -x parameter - what are the three parts?
9 months ago by dsull ★ 7.4k
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1.7k
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Comment: Comment: 10X #3' RNA seq - How is strandedness determined?
9 months ago by dsull ★ 7.4k
2
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451
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
9 months ago by dsull ★ 7.4k
2
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1
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698
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
9 months ago by dsull ★ 7.4k
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2
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2.6k
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Answer: Answer: RNA STAR and trimming
9 months ago by dsull ★ 7.4k
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1.8k
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Answer: Answer: Conversion of Gene Name to Ensembl ID
9 months ago by dsull ★ 7.4k
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1
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2.6k
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Comment: Comment: RNA STAR and trimming
9 months ago by dsull ★ 7.4k
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0
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1.1k
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Comment: Comment: DESeq2 for DE analysis of proteins
9 months ago by dsull ★ 7.4k
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1
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1.1k
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Comment: Comment: DESeq2 for DE analysis of proteins
9 months ago by dsull ★ 7.4k
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1
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1.1k
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Answer: Answer: DESeq2 for DE analysis of proteins
9 months ago by dsull ★ 7.4k
2
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0
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766
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Comment: Comment: gene ids do not have corresponding valid gene names kallisto bus tools
9 months ago by dsull ★ 7.4k
0
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0
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2.6k
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Comment: Comment: RNA STAR and trimming
9 months ago by dsull ★ 7.4k
2
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1
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766
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
9 months ago by dsull ★ 7.4k
1
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1
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736
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Comment: Comment: indexing the drosophila genome for kallisto
9 months ago by dsull ★ 7.4k
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1
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736
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Answer: Answer: indexing the drosophila genome for kallisto
9 months ago by dsull ★ 7.4k
1
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0
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683
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Answer: Answer: STAR Index error
9 months ago by dsull ★ 7.4k
2
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0
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3.6k
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Comment: Comment: Why it is not use UMIs for RNA-seq?
9 months ago by dsull ★ 7.4k
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0
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599
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Comment: Comment: Changing existing identifiers in RNASeq data to gene names
10 months ago by dsull ★ 7.4k
1
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1
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2.5k
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Comment: Comment: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
10 months ago by dsull ★ 7.4k
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1.0k
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Comment: Comment: filter reads based on mapped length
10 months ago by dsull ★ 7.4k
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1
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1.0k
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
10 months ago by dsull ★ 7.4k
0
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1
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1.0k
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
10 months ago by dsull ★ 7.4k
4
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2
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1.1k
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
10 months ago by dsull ★ 7.4k
0
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1
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1.0k
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
10 months ago by dsull ★ 7.4k
0
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0
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576
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
10 months ago by dsull ★ 7.4k
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0
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828
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Comment: Comment: Detecting a virus in RNA-Seq Data
10 months ago by dsull ★ 7.4k
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0
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709
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Comment: Comment: Can I go from kallisto results to SEURAT directly
10 months ago by dsull ★ 7.4k
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0
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472
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Comment: Comment: Hybrid ScRNA Seq genome (transcriptome
10 months ago by dsull ★ 7.4k
1
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1
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612
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Comment: Comment: single nucleus RNA seq processing pipeline questions
10 months ago by dsull ★ 7.4k
2
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1
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725
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Comment: Comment: Differential gene expression
10 months ago by dsull ★ 7.4k
2
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0
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901
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Comment: Comment: Basic question about lncRNA identification
10 months ago by dsull ★ 7.4k
2
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0
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936
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Comment: Comment: FASTQ header correction to remove .1 and .2 from paired end - SRA files
10 months ago by dsull ★ 7.4k
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0
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637
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
10 months ago by dsull ★ 7.4k
1
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1
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958
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Comment: Comment: Are there instutions that allow to use their hpc without charge?
10 months ago by dsull ★ 7.4k
773 results • Page 3 of 16
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