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comments
3
votes
1
reply
586
views
Comment:
Comment: Average expression of a sample in single-cell data
8 months ago by
dsull
★ 6.9k
1
vote
0
replies
660
views
Answer:
Answer: scRNAseq normalization
8 months ago by
dsull
★ 6.9k
0
votes
0
replies
297
views
Answer:
Answer: STAR --sjdbGTFfile in alignment step
8 months ago by
dsull
★ 6.9k
1
vote
0
replies
564
views
Comment:
Comment: RNA-seq bam file normalization
8 months ago by
dsull
★ 6.9k
1
vote
1
reply
574
views
Answer:
Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
9 months ago by
dsull
★ 6.9k
2
votes
0
replies
691
views
Comment:
Comment: How I should set `STAR` parameters to keep all the intronic reads?
9 months ago by
dsull
★ 6.9k
4
votes
1
reply
691
views
Answer:
Answer: How I should set `STAR` parameters to keep all the intronic reads?
9 months ago by
dsull
★ 6.9k
1
vote
1
reply
896
views
Comment:
Comment: Huge decrease of BUS records using bustools
9 months ago by
dsull
★ 6.9k
0
votes
1
reply
417
views
Comment:
Comment: Why does Phred+ encoding changes after trimming fastq files??
9 months ago by
dsull
★ 6.9k
3
votes
0
replies
839
views
Answer:
Answer: Would reaching out to local labs and startups help with my career transition?
9 months ago by
dsull
★ 6.9k
0
votes
0
replies
955
views
Answer:
Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 9 months ago by
Ram
44k • written 9 months ago by
dsull
★ 6.9k
0
votes
0
replies
955
views
Comment:
Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
9 months ago by
dsull
★ 6.9k
2
votes
0
replies
950
views
Comment:
Comment: How does kallisto handle multi mapped reads?
9 months ago by
dsull
★ 6.9k
0
votes
0
replies
385
views
Answer:
Answer: Using tophat2 output for kallisto
9 months ago by
dsull
★ 6.9k
0
votes
2
replies
950
views
Comment:
Comment: How does kallisto handle multi mapped reads?
9 months ago by
dsull
★ 6.9k
2
votes
1
reply
623
views
Answer:
Answer: bulk seq vs. sc-seq
9 months ago by
dsull
★ 6.9k
0
votes
1
reply
946
views
Comment:
Comment: Differential expression analysis with very high duplication rate
9 months ago by
dsull
★ 6.9k
0
votes
1
reply
946
views
Answer:
Answer: Differential expression analysis with very high duplication rate
9 months ago by
dsull
★ 6.9k
1
vote
0
replies
614
views
Answer:
Answer: How to do DESeq2 on Kallisto Data
9 months ago by
dsull
★ 6.9k
0
votes
1
reply
825
views
Comment:
Comment: How to exclude sex-dependent genes from RNASEQ?
9 months ago by
dsull
★ 6.9k
1
vote
0
replies
825
views
Comment:
Comment: How to exclude sex-dependent genes from RNASEQ?
9 months ago by
dsull
★ 6.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
9 months ago by
dsull
★ 6.9k
2
votes
1
reply
1.1k
views
Comment:
Comment: RNA seq, correlation, gene expression, STAR count
10 months ago by
dsull
★ 6.9k
3
votes
1
reply
1.1k
views
Answer:
Answer: RNA seq, correlation, gene expression, STAR count
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
1.6k
views
Comment:
Comment: I would like to exclude rRNA in RSEM and quantify other genes.
10 months ago by
dsull
★ 6.9k
2
votes
1
reply
1.6k
views
Comment:
Comment: I would like to exclude rRNA in RSEM and quantify other genes.
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
160k
views
Comment:
Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
10 months ago by
dsull
★ 6.9k
1
vote
1
reply
1.6k
views
Answer:
Answer: I would like to exclude rRNA in RSEM and quantify it.
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
1.9k
views
Comment:
Comment: Troubleshooting RNA-seq data with DNA contamination
10 months ago by
dsull
★ 6.9k
1
vote
1
reply
1.9k
views
Comment:
Comment: Troubleshooting RNA-seq data with DNA contamination
10 months ago by
dsull
★ 6.9k
0
votes
1
reply
1.9k
views
Comment:
Comment: Troubleshooting RNA-seq data with DNA contamination
10 months ago by
dsull
★ 6.9k
0
votes
1
reply
1.9k
views
Comment:
Comment: Troubleshooting RNA-seq data with DNA contamination
10 months ago by
dsull
★ 6.9k
2
votes
2
replies
1.5k
views
Comment:
Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
10 months ago by
dsull
★ 6.9k
1
vote
1
reply
1.5k
views
Comment:
Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
3.2k
views
Comment:
Comment: Determining computer time required
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
969
views
Comment:
Comment: Problem in Salmon when indexing Rattus_norvegicus
10 months ago by
dsull
★ 6.9k
1
vote
0
replies
3.2k
views
Comment:
Comment: Determining computer time required
10 months ago by
dsull
★ 6.9k
0
votes
2
replies
3.2k
views
Comment:
Comment: Determining computer time required
10 months ago by
dsull
★ 6.9k
1
vote
2
replies
3.2k
views
Comment:
Comment: Determining computer time required
10 months ago by
dsull
★ 6.9k
3
votes
1
reply
509
views
Answer:
Answer: Using Expression of a Gene as a Linear Regression Variable
10 months ago by
dsull
★ 6.9k
2
votes
1
reply
691
views
Answer:
Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 10 months ago by
ATpoint
85k • written 10 months ago by
dsull
★ 6.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
10 months ago by
dsull
★ 6.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
10 months ago by
dsull
★ 6.9k
4
votes
0
replies
2.7k
views
Comment:
Comment: First experiences matter
11 months ago by
dsull
★ 6.9k
1
vote
1
reply
1.0k
views
Comment:
Comment: Log2 transformation is well used, but is there a good paper that can be used as
11 months ago by
dsull
★ 6.9k
2
votes
1
reply
991
views
Comment:
Comment: Tests for the linear and non-linear relationship between two genes
11 months ago by
dsull
★ 6.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: Inquiry Regarding Cutoff for Survival Analysis
11 months ago by
dsull
★ 6.9k
0
votes
0
replies
785
views
Comment:
Comment: Kallisto-Bustools Output prpblems
11 months ago by
dsull
★ 6.9k
1
vote
1
reply
785
views
Answer:
Answer: Kallisto-Bustools Output prpblems
11 months ago by
dsull
★ 6.9k
0
votes
0
replies
897
views
Comment:
Comment: Kallisto-bustools output to Seurat Object
11 months ago by
dsull
★ 6.9k
724 results • Page
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