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7
votes
5
replies
2.2k
views
Invertebrate phylogenetic tree on Ensembl
genome phylogeny ensembl
updated 4.8 years ago by 20 • written 7.0 years ago by ▴ 70
2
votes
8
replies
3.7k
views
Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam
updated 5.4 years ago by 20 • written 8.0 years ago by ▴ 70
0
votes
2
replies
990
views
No Prominent Change in Structure of Mutated Proteins
alignment sequence protein-modelling
updated 6.1 years ago by 21k • written 6.1 years ago by ▴ 70
2
votes
1
reply
1.2k
views
Exon Sequences for SCN5A gene for a specific population
gene sequence Ensembl
updated 6.2 years ago by 12k • written 7.8 years ago by ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: Pre_processing BAM file for variant calling using RNA-seq data
6.4 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: Pre_processing BAM file for variant calling using RNA-seq data
6.4 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
1.7k
views
Comment: C: Pre_processing BAM file for variant calling using RNA-seq data
6.4 years ago by ammarsabir15 ▴ 70
3
votes
7
replies
1.7k
views
Pre_processing BAM file for variant calling using RNA-seq data
wheat_RNA-Seq RNA-Seq alignment
6.4 years ago by ammarsabir15 ▴ 70
1
vote
1
reply
2.3k
views
Error Running codeml
phylogeny PAML alignment
updated 6.5 years ago by ▴ 230 • written 6.5 years ago by ▴ 70
0
votes
0
replies
2.1k
views
Comment: C: Extract Mitochondrial Genome Sequence from 1000 Genomes Data
6.7 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
2.1k
views
Comment: C: Extract Mitochondrial Genome Sequence from 1000 Genomes Data
6.7 years ago by ammarsabir15 ▴ 70
0
votes
5
replies
2.1k
views
Extract Mitochondrial Genome Sequence from 1000 Genomes Data
next-gen-sequencing 1000genomes
updated 18 months ago by 44k • written 6.7 years ago by ▴ 70
0
votes
3
replies
2.4k
views
Reference genome for wheat/ Triticum aestivum
genome next-gen sequencing
updated 7.0 years ago by 24k • written 7.0 years ago by ▴ 70
0
votes
0
replies
2.2k
views
Comment: C: Invertebrate phylogenetic tree on Ensembl
7.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
2.2k
views
Comment: C: Invertebrate phylogenetic tree on Ensembl
7.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
1.9k
views
Comment: C: Error in pysam: trying to read BAM file using CYTHON
7.1 years ago by ammarsabir15 ▴ 70
0
votes
3
replies
1.9k
views
Error in pysam: trying to read BAM file using CYTHON
next-gen alignment pysam
updated 7.1 years ago by 104k • written 7.1 years ago by ▴ 70
0
votes
0
replies
2.8k
views
Comment: C: pysam not plotting exact values for coverage
7.2 years ago by ammarsabir15 ▴ 70
0
votes
2
replies
2.8k
views
pysam not plotting exact values for coverage
pysam coverage alignment
updated 7.2 years ago by 104k • written 7.2 years ago by ▴ 70
1
vote
2
replies
1.8k
views
Phylogenetic Tree construction
Phylogenetics Y-DNA R
updated 7.3 years ago by ★ 2.6k • written 7.4 years ago by ▴ 70
4
votes
1
reply
8.4k
views
Difference between Alignment quality and Mapping quality
sequence BAM next-gen
updated 7.4 years ago by ▴ 40 • written 7.4 years ago by ▴ 70
0
votes
0
replies
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.4 years ago by ammarsabir15 ▴ 70
6
votes
7
replies
1.5k
views
Development of a tool for NGS
NGS Tool_development
updated 7.7 years ago by 10k • written 7.7 years ago by ▴ 70
1
vote
1
reply
1.5k
views
Comment: C: Development of a tool for NGS
7.7 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
2
votes
18
replies
6.6k
views
Extract vcf from 1000 genomes based on population and region
alignment sequencing snp
updated 7.7 years ago by 24k • written 7.7 years ago by ▴ 70
0
votes
1
reply
6.6k
views
Comment: A: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
updated 7.7 years ago by 44k • written 7.7 years ago by ▴ 70
0
votes
0
replies
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
0
votes
2
replies
6.6k
views
Comment: C: Extract vcf from 1000 genomes based on population and region
7.7 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
2.4k
views
Comment: C: Aligning fasta to fastq
7.8 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
2.4k
views
Comment: C: Aligning fasta to fastq
7.8 years ago by ammarsabir15 ▴ 70
2
votes
6
replies
2.4k
views
Aligning fasta to fastq
sequencing ngs alignment
7.8 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
7.5k
views
Answer: A: Plotting Venn diagram for multiple BED files
7.8 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
2.1k
views
Issues in Gene Set Enrichment Analysis using TCGAbiolinks
bioconductor TCGAbiolinks R
7.9 years ago by ammarsabir15 ▴ 70
1
vote
0
replies
3.7k
views
Comment: C: Error Filtering BAM file based on mapping qualities in python's pysam
8.0 years ago by ammarsabir15 ▴ 70
0
votes
2
replies
2.9k
views
Comment: C: pysam and samtools
8.0 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
1.4k
views
Comment: C: .hits format in NGS
8.0 years ago by ammarsabir15 ▴ 70
0
votes
2
replies
4.0k
views
Comment: C: perl programming query
8.0 years ago by ammarsabir15 ▴ 70
2
votes
6
replies
4.5k
views
Filter low quality reads in bam files
next-gen python pysam
updated 8.0 years ago by 20k • written 8.0 years ago by ▴ 70
0
votes
0
replies
4.5k
views
Comment: C: Filter low quality reads in bam files
8.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
4.5k
views
Comment: C: Filter low quality reads in bam files
8.0 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
4.5k
views
Comment: C: Algorithm for Getting per position nucleobases in python from bam file
8.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
3.7k
views
Comment: C: Error Filtering BAM file based on mapping qualities in python's pysam
8.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
3.7k
views
Comment: C: Error Filtering BAM file based on mapping qualities in python's pysam
8.0 years ago by ammarsabir15 ▴ 70
0
votes
0
replies
3.7k
views
Comment: C: Error Filtering BAM file based on mapping qualities in python's pysam
8.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
2.2k
views
Answer: A: DESeq2 and R commands
8.0 years ago by ammarsabir15 ▴ 70
0
votes
1
reply
4.5k
views
Comment: C: Algorithm for Getting per position nucleobases in python from bam file
8.1 years ago by ammarsabir15 ▴ 70
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