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4
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1.8k
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Bioinformatics in Graviton2 AWS
genome assembly aws graviton2
written 3.5 years ago by ▴ 30
0
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0
replies
480
views
Understanding Kfamscan
K0 kfamscan kegg protein
2.9 years ago by vm.higareda ▴ 30
0
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0
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3.0k
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Comment: Comment: N50 for de novo assembly result is too short
3.6 years ago by vm.higareda ▴ 30
3
votes
1
reply
990
views
How to download specific genomes
comparative ncbi genomes genomics assembly
updated 4.2 years ago by 152k • written 4.2 years ago by ▴ 30
1
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1
reply
1.3k
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taxonomic classification with rna-seq data
taxonomy rnaseq Kraken kaiju IMSA+A
5.5 years ago by vm.higareda ▴ 30
0
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1
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4.9k
views
Comment: C: Problem to run checkm.
5.7 years ago by vm.higareda ▴ 30
0
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0
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1.7k
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Comment: C: what is Kmer coverage
5.8 years ago by vm.higareda ▴ 30
0
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2
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1.7k
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what is Kmer coverage
sequence genome metagenome Assembly SPAdes
updated 5.8 years ago by ★ 2.4k • written 5.8 years ago by ▴ 30
2
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1
reply
2.5k
views
kallisto with reference genome
RNA-Seq kallisto
6.5 years ago by vm.higareda ▴ 30
0
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2
replies
1.9k
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HTseq-counts not counting correctly?
RNA-Seq htseq Drosophila
6.7 years ago by vm.higareda ▴ 30
0
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1
reply
3.0k
views
Comment: C: counts in rna-seq cpm
7.3 years ago by vm.higareda ▴ 30
0
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5
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3.0k
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counts in rna-seq cpm
RNA-Seq edgeR cpm transcriptomics data
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 30
0
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1
reply
3.0k
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Comment: C: counts in ran-seq cpm
7.3 years ago by vm.higareda ▴ 30
1
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0
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3.8k
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Comment: C: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
7.3 years ago by vm.higareda ▴ 30
0
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0
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3.8k
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Comment: A: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
7.3 years ago by vm.higareda ▴ 30
0
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1
reply
1.8k
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detecting antisense transcripts
RNA-Seq strand rna illumina antisense
7.4 years ago by vm.higareda ▴ 30
0
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0
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4.2k
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Comment: C: edgeR understanding statistics
7.7 years ago by vm.higareda ▴ 30
0
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1
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4.2k
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Comment: C: edgeR understanding statistics
7.7 years ago by vm.higareda ▴ 30
3
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6
replies
4.2k
views
edgeR understanding statistics
RNA-Seq edgeR statistics transcriptomics
updated 7.7 years ago by 89k • written 7.7 years ago by ▴ 30
0
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0
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29k
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Comment: C: TMM normalization factors in RNA-seq analysis
7.7 years ago by vm.higareda ▴ 30
1
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2
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1.7k
views
enrichment analysis tools
RNA-Seq DE expression enrichment gene
updated 7.8 years ago by 7.6k • written 7.8 years ago by ▴ 30
0
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0
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5.5k
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Comment: C: Strand-option in hisat2
8.0 years ago by vm.higareda ▴ 30
0
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1
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5.5k
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Comment: C: Strand-option in hisat2
8.0 years ago by vm.higareda ▴ 30
0
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1
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5.5k
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Comment: C: Strand-option in hisat2
8.0 years ago by vm.higareda ▴ 30
0
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0
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5.5k
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Comment: A: Strand-option in hisat2
8.0 years ago by vm.higareda ▴ 30
1
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11
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5.5k
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Strand-option in hisat2
RNA-Seq hisat2 strand
8.0 years ago by vm.higareda ▴ 30
0
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2
replies
5.5k
views
Comment: A: Strand-option in hisat2
8.0 years ago by vm.higareda ▴ 30
0
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0
replies
1.3k
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basic question cuffdiff
RNA-Seq cuffdiff transcriptomics
8.0 years ago by vm.higareda ▴ 30
0
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1
reply
1.8k
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Comment: C: Inconsistency Between Cufflinks And Cuffdiff
8.1 years ago by vm.higareda ▴ 30
0
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1
reply
1.8k
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Comment: C: Inconsistency Between Cufflinks And Cuffdiff
8.1 years ago by vm.higareda ▴ 30
0
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5
replies
1.8k
views
Inconsistency Between Cufflinks And Cuffdiff
RNA-Seq cufflinks rna cuffdiff
updated 8.1 years ago by 102k • written 8.1 years ago by ▴ 30
0
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1
reply
5.6k
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Comment: C: Using Hisat2 with strand specific bacteria sequences
8.7 years ago by vm.higareda ▴ 30
3
votes
2
replies
2.6k
views
Doubts about RNA-seq Cufflinks
RNA-Seq
updated 8.7 years ago by 105k • written 8.7 years ago by ▴ 30
0
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1
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1.7k
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Comment: C: Drosophila differential expression.
8.8 years ago by vm.higareda ▴ 30
1
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3
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1.7k
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Drosophila differential expression.
RNA-Seq drosophila Hisat2 cufflinks cuffdiff
updated 8.8 years ago by ★ 1.6k • written 8.8 years ago by ▴ 30
0
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0
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3.1k
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Comment: C: Differential expression analysis of transcriptome data
8.9 years ago by vm.higareda ▴ 30
3
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5
replies
5.6k
views
Using Hisat2 with strand specific bacteria sequences
alignment RNA-Seq
updated 2.2 years ago by 45k • written 8.9 years ago by ▴ 30
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