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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer ucsc ChIP-Seq
updated 21 months ago by • 0 • written 7.7 years ago by ▴ 90
5
votes
14
replies
3.5k
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Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2
updated 3.5 years ago by ▴ 70 • written 5.6 years ago by ▴ 90
0
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0
replies
7.1k
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Comment: C: How To Calculate Conservation Score Of Given Bed Regions
updated 5.4 years ago by 44k • written 7.9 years ago by ▴ 90
0
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0
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3.5k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.6 years ago by varsha619 ▴ 90
0
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1
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3.5k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.6 years ago by varsha619 ▴ 90
0
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0
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3.5k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.6 years ago by varsha619 ▴ 90
0
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0
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3.5k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.6 years ago by varsha619 ▴ 90
0
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0
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3.5k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.6 years ago by varsha619 ▴ 90
0
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1
reply
3.1k
views
Comment: C: UCSC itemRgb on column 9
6.4 years ago by varsha619 ▴ 90
0
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1
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3.1k
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Comment: C: UCSC itemRgb on column 9
6.4 years ago by varsha619 ▴ 90
0
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1
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3.1k
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Comment: C: UCSC itemRgb on column 9
6.4 years ago by varsha619 ▴ 90
0
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8
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3.1k
views
UCSC itemRgb on column 9
ucsc itemRgb
6.4 years ago by varsha619 ▴ 90
0
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0
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8.2k
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Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
0
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0
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8.2k
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Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
0
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1
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8.2k
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Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
0
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0
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8.2k
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Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
0
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1
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8.2k
views
Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
0
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1
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8.2k
views
Comment: C: STAR for chip-seq
6.7 years ago by varsha619 ▴ 90
8
votes
13
replies
8.2k
views
STAR for chip-seq
star ChIP-Seq alignment
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by ▴ 90
0
votes
1
reply
2.5k
views
Comment: C: fasta to bed format with more information that just chr locations
6.8 years ago by varsha619 ▴ 90
0
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1
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2.5k
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Comment: C: fasta to bed format with more information that just chr locations
6.8 years ago by varsha619 ▴ 90
13
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10
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2.5k
views
fasta to bed format with more information that just chr locations
fasta to bed
updated 6.8 years ago by ★ 4.0k • written 6.8 years ago by ▴ 90
0
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0
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2.5k
views
Comment: C: using MACS2 with hg38
6.9 years ago by varsha619 ▴ 90
0
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2
replies
2.5k
views
using MACS2 with hg38
macs2 hg38
updated 6.9 years ago by 13k • written 6.9 years ago by ▴ 90
0
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1
reply
2.7k
views
Comment: C: bp overlap between multiple beds
7.0 years ago by varsha619 ▴ 90
0
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1
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2.7k
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Comment: C: bp overlap between multiple beds
7.1 years ago by varsha619 ▴ 90
0
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1
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2.7k
views
Comment: C: bp overlap between multiple beds
7.1 years ago by varsha619 ▴ 90
1
vote
7
replies
2.7k
views
bp overlap between multiple beds
bedtools multiinter venn
updated 7.1 years ago by 36k • written 7.1 years ago by ▴ 90
0
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0
replies
4.8k
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Comment: C: Finding An Genomic Intervals Shared For A Given Individual As Called By Two Or M
7.1 years ago by varsha619 ▴ 90
0
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0
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6.0k
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Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
0
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0
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6.0k
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Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
0
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1
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6.0k
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Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
0
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1
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6.0k
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Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
1
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1
reply
6.0k
views
Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
7
votes
14
replies
6.0k
views
wig files to bigwig using UCSC kent
wigtobigwig
updated 7.1 years ago by ▴ 580 • written 7.1 years ago by ▴ 90
0
votes
1
reply
6.0k
views
Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
0
votes
1
reply
6.0k
views
Comment: C: wig files to bigwig using UCSC kent
7.1 years ago by varsha619 ▴ 90
0
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0
replies
3.7k
views
Comment: C: bedops gff2bed error
7.1 years ago by varsha619 ▴ 90
2
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2
replies
3.7k
views
bedops gff2bed error
bedops gff2bed
updated 7.1 years ago by 36k • written 7.1 years ago by ▴ 90
3
votes
2
replies
3.1k
views
Does MACS score correlate with binding strength
macs ChIP-Seq
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 90
0
votes
1
reply
4.2k
views
Comment: C: meme-chip command line usage error
7.2 years ago by varsha619 ▴ 90
3
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10
replies
4.2k
views
meme-chip command line usage error
meme-chip
7.2 years ago by varsha619 ▴ 90
0
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1
reply
4.2k
views
Answer: A: meme-chip command line usage error
7.2 years ago by varsha619 ▴ 90
0
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0
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4.2k
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Comment: C: meme-chip command line usage error
7.2 years ago by varsha619 ▴ 90
0
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0
replies
4.2k
views
Comment: C: meme-chip command line usage error
7.2 years ago by varsha619 ▴ 90
0
votes
1
reply
9.3k
views
Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
7.2 years ago by varsha619 ▴ 90
0
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0
replies
3.1k
views
Comment: C: Does MACS score correlate with binding strength
7.2 years ago by varsha619 ▴ 90
0
votes
0
replies
4.9k
views
Comment: C: bedGraphToBigWig error - end coordinate bigger than chr
7.6 years ago by varsha619 ▴ 90
1
vote
4
replies
4.9k
views
bedGraphToBigWig error - end coordinate bigger than chr
bedGraphToBigWig macs2
updated 7.6 years ago by 36k • written 7.6 years ago by ▴ 90
0
votes
0
replies
3.3k
views
Comment: C: phastcon conservation score for chip seq peaks
7.9 years ago by varsha619 ▴ 90
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