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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer ucsc ChIP-Seq
updated 19 months ago by • 0 • written 7.5 years ago by ▴ 90
5
votes
14
replies
3.3k
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Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2
updated 3.3 years ago by ▴ 70 • written 5.5 years ago by ▴ 90
0
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0
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7.0k
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Comment: C: How To Calculate Conservation Score Of Given Bed Regions
updated 5.2 years ago by 44k • written 7.7 years ago by ▴ 90
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0
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3.3k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.4 years ago by varsha619 ▴ 90
0
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1
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3.3k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.4 years ago by varsha619 ▴ 90
0
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0
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3.3k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.5 years ago by varsha619 ▴ 90
0
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0
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3.3k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.5 years ago by varsha619 ▴ 90
0
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0
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3.3k
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Comment: C: Bowtie2 hg19 reference for gatk MuTect
5.5 years ago by varsha619 ▴ 90
0
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1
reply
3.0k
views
Comment: C: UCSC itemRgb on column 9
6.2 years ago by varsha619 ▴ 90
0
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1
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3.0k
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Comment: C: UCSC itemRgb on column 9
6.2 years ago by varsha619 ▴ 90
0
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1
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3.0k
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Comment: C: UCSC itemRgb on column 9
6.2 years ago by varsha619 ▴ 90
0
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8
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3.0k
views
UCSC itemRgb on column 9
ucsc itemRgb
6.2 years ago by varsha619 ▴ 90
0
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0
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8.0k
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Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
0
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0
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8.0k
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Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
0
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1
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8.0k
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Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
0
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0
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8.0k
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Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
0
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1
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8.0k
views
Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
0
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1
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8.0k
views
Comment: C: STAR for chip-seq
6.6 years ago by varsha619 ▴ 90
8
votes
13
replies
8.0k
views
STAR for chip-seq
star ChIP-Seq alignment
updated 6.6 years ago by ★ 2.1k • written 6.6 years ago by ▴ 90
0
votes
1
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2.4k
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Comment: C: fasta to bed format with more information that just chr locations
6.6 years ago by varsha619 ▴ 90
0
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1
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2.4k
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Comment: C: fasta to bed format with more information that just chr locations
6.6 years ago by varsha619 ▴ 90
13
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10
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2.4k
views
fasta to bed format with more information that just chr locations
fasta to bed
updated 6.6 years ago by ★ 4.0k • written 6.6 years ago by ▴ 90
0
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0
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2.4k
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Comment: C: using MACS2 with hg38
6.8 years ago by varsha619 ▴ 90
0
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2
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2.4k
views
using MACS2 with hg38
macs2 hg38
updated 6.8 years ago by 13k • written 6.8 years ago by ▴ 90
0
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1
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2.6k
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Comment: C: bp overlap between multiple beds
6.9 years ago by varsha619 ▴ 90
0
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1
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2.6k
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Comment: C: bp overlap between multiple beds
6.9 years ago by varsha619 ▴ 90
0
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1
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2.6k
views
Comment: C: bp overlap between multiple beds
6.9 years ago by varsha619 ▴ 90
1
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7
replies
2.6k
views
bp overlap between multiple beds
bedtools multiinter venn
updated 6.9 years ago by 36k • written 6.9 years ago by ▴ 90
0
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0
replies
4.6k
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Comment: C: Finding An Genomic Intervals Shared For A Given Individual As Called By Two Or M
6.9 years ago by varsha619 ▴ 90
0
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0
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5.8k
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Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
0
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0
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5.8k
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Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
0
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1
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5.8k
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Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
0
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1
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5.8k
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Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
1
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1
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5.8k
views
Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
7
votes
14
replies
5.8k
views
wig files to bigwig using UCSC kent
wigtobigwig
updated 6.9 years ago by ▴ 580 • written 6.9 years ago by ▴ 90
0
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1
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5.8k
views
Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
0
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1
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5.8k
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Comment: C: wig files to bigwig using UCSC kent
6.9 years ago by varsha619 ▴ 90
0
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0
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3.6k
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Comment: C: bedops gff2bed error
6.9 years ago by varsha619 ▴ 90
2
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2
replies
3.6k
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bedops gff2bed error
bedops gff2bed
updated 6.9 years ago by 36k • written 6.9 years ago by ▴ 90
3
votes
2
replies
3.0k
views
Does MACS score correlate with binding strength
macs ChIP-Seq
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 90
0
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1
reply
4.1k
views
Comment: C: meme-chip command line usage error
7.1 years ago by varsha619 ▴ 90
0
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1
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4.1k
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Answer: A: meme-chip command line usage error
7.1 years ago by varsha619 ▴ 90
3
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10
replies
4.1k
views
meme-chip command line usage error
meme-chip
7.1 years ago by varsha619 ▴ 90
0
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0
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4.1k
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Comment: C: meme-chip command line usage error
7.1 years ago by varsha619 ▴ 90
0
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0
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4.1k
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Comment: C: meme-chip command line usage error
7.1 years ago by varsha619 ▴ 90
0
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1
reply
9.0k
views
Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
7.1 years ago by varsha619 ▴ 90
0
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0
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3.0k
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Comment: C: Does MACS score correlate with binding strength
7.1 years ago by varsha619 ▴ 90
0
votes
0
replies
4.8k
views
Comment: C: bedGraphToBigWig error - end coordinate bigger than chr
7.4 years ago by varsha619 ▴ 90
1
vote
4
replies
4.8k
views
bedGraphToBigWig error - end coordinate bigger than chr
bedGraphToBigWig macs2
updated 7.5 years ago by 36k • written 7.5 years ago by ▴ 90
0
votes
0
replies
3.3k
views
Comment: C: phastcon conservation score for chip seq peaks
7.7 years ago by varsha619 ▴ 90
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