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698
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Ancestral sequence reconstruction at each node of a gene tree
tree reconstruction ancestral gene
updated 22 months ago by ▴ 850 • written 22 months ago by ▴ 220
1
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1
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1.0k
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Comment: Comment: Split multiple annotations from SnpEff
2.2 years ago by biomonte ▴ 220
5
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3
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1.0k
views
Split multiple annotations from SnpEff
SnpEff AWK Bash VCF Annotation
updated 2.2 years ago by 6.2k • written 2.2 years ago by ▴ 220
1
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0
replies
983
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Comment: Comment: Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
2.8 years ago by biomonte ▴ 220
1
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2
replies
983
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Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
orthologs OMAmer HOGs oma pyHAM
2.8 years ago by biomonte ▴ 220
0
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0
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4.8k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
3.5 years ago by biomonte ▴ 220
9
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11
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4.8k
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BED file: Find intervals that overlap a certain percentage and keep the longest one
Bed bedtools bash bedops
3.5 years ago by biomonte ▴ 220
0
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0
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4.8k
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Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
3.5 years ago by biomonte ▴ 220
0
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1
reply
4.8k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
3.5 years ago by biomonte ▴ 220
1
vote
1
reply
4.8k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
3.5 years ago by biomonte ▴ 220
1
vote
1
reply
4.8k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
3.5 years ago by biomonte ▴ 220
0
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0
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53k
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Comment: Comment: How To Split A Multiple Fasta
3.6 years ago by biomonte ▴ 220
1
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0
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2.2k
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Answer: Answer: genBlastA output file .gblast error
3.7 years ago by biomonte ▴ 220
0
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0
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2.4k
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Comment: Comment: s. start and s.end in tabular BLAST output are the wrong way around?
3.7 years ago by biomonte ▴ 220
0
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1
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3.5k
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Comment: C: How to identify single-copy genes across multiple complete genomes?
6.6 years ago by biomonte ▴ 220
4
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4
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3.5k
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How to identify single-copy genes across multiple complete genomes?
target capture hybpiper spades single-copy genes
6.6 years ago by biomonte ▴ 220
0
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2
replies
1.9k
views
Script error when extracting sequences of a list of orthologous groups
bash orthomcl software error blast
updated 6.6 years ago by • 0 • written 7.7 years ago by ▴ 220
1
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1
reply
2.1k
views
Paralog detection after target capture - HybPiper
HybPiper target capture paralogy SPAdes Exonerate
6.6 years ago by biomonte ▴ 220
1
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0
replies
3.1k
views
Answer: A: Should replicate analyses of ADMIXTURE all have the same cross-validation values
7.5 years ago by biomonte ▴ 220
4
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6
replies
4.6k
views
Is TransDecoder predicting the "true" set of protein-coding regions?
RNA-Seq TransDecoder ORF
updated 7.5 years ago by 20 • written 7.7 years ago by ▴ 220
2
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1
reply
2.8k
views
Converting a big SNP genotype table to plink (.ped) file for ADMIXTURE
plink SNP PED format admixture perl
updated 7.5 years ago by 8.7k • written 7.5 years ago by ▴ 220
1
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0
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3.5k
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Comment: C: Problems creating a blast database
7.6 years ago by biomonte ▴ 220
1
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2
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4.5k
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Answer: A: Trinotate error DBD::SQLite::db do failed: no such table:
7.6 years ago by biomonte ▴ 220
2
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1
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3.5k
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Answer: A: Problems creating a blast database
7.6 years ago by biomonte ▴ 220
0
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0
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5.2k
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Comment: C: pathway mapping using KEGG
7.6 years ago by biomonte ▴ 220
1
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1
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5.2k
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Comment: C: pathway mapping using KEGG
7.6 years ago by biomonte ▴ 220
0
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1
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16k
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Comment: C: How to extract the longest orf?
7.7 years ago by biomonte ▴ 220
0
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1
reply
4.6k
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Comment: C: Is TransDecoder predicting the "true" set of protein-coding regions?
7.7 years ago by biomonte ▴ 220
0
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1
reply
4.6k
views
Comment: C: Is TransDecoder predicting the "true" set of protein-coding regions?
7.7 years ago by biomonte ▴ 220
0
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1
reply
5.2k
views
Comment: C: pathway mapping using KEGG
7.7 years ago by biomonte ▴ 220
5
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1
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8.2k
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Answer: A: Prepare gene families for CAFE
7.7 years ago by biomonte ▴ 220
0
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0
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1.9k
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Answer: A: Script error when extracting sequences of a list of orthologous groups
7.7 years ago by biomonte ▴ 220
0
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0
replies
8.0k
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Comment: Comment: orthomcl error: The total number of locks exceeds the lock table size at orthomc
updated 2.3 years ago by 44k • written 7.7 years ago by ▴ 220
0
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0
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7.2k
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Answer: A: How to know the name of the pathways using KO numbers?
7.8 years ago by biomonte ▴ 220
0
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2
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5.2k
views
Answer: Answer: pathway mapping using KEGG
updated 2.2 years ago by 44k • written 7.8 years ago by ▴ 220
3
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1
reply
2.4k
views
How to correctly format WEGO's input with Perl
RNA-Seq perl wego gene ontology trinotate
8.2 years ago by biomonte ▴ 220
0
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1
reply
19k
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Comment: A: Easy way to run easily orthoMCL (Copy & paste)
8.3 years ago by biomonte ▴ 220
0
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2
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19k
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Comment: C: Easy way to run easily orthoMCL (Copy & paste)
8.3 years ago by biomonte ▴ 220
0
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0
replies
14k
views
Comment: C: A:orthomcl with local mysql server on linux server, complete install
8.3 years ago by biomonte ▴ 220
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