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Answer: Answer: Functional enrichment analysis of bacteria
3.3 years ago by Guangchuang Yu ★ 2.6k
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0
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4.0k
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Comment: Comment: clusterProfiler::enrichGO() is getting very slow
3.3 years ago by Guangchuang Yu ★ 2.6k
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1
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4.6k
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Answer: Answer: relevel the clusterProfiler object
3.3 years ago by Guangchuang Yu ★ 2.6k
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0
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6.3k
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Answer: Answer: How to get KEGG pathway names in KEGG enrichment analysis using clusterprofiler
3.3 years ago by Guangchuang Yu ★ 2.6k
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0
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9.7k
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Comment: Comment: gseGO: no term enriched under specific pvalueCutoff
3.3 years ago by Guangchuang Yu ★ 2.6k
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0
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5.5k
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Answer: Answer: clusterProfiler and enrichplot: visualising groupGO results with individual gene
3.3 years ago by Guangchuang Yu ★ 2.6k
1
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1
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13k
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Answer: Answer: What's the difference between enrichKEGG and gseKEGG
3.3 years ago by Guangchuang Yu ★ 2.6k
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1.6k
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Comment: Comment: clusterProfiler cnetplot error
3.3 years ago by Guangchuang Yu ★ 2.6k
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0
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1.6k
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Answer: Answer: GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
3.3 years ago by Guangchuang Yu ★ 2.6k
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2.0k
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Answer: Answer: GO and KEGG pathway analysis of lncRNA genes
3.3 years ago by Guangchuang Yu ★ 2.6k
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1
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1.5k
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Comment: Comment: clusterProfiler won't read gene list
3.3 years ago by Guangchuang Yu ★ 2.6k
1
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0
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1.3k
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Answer: Answer: clusterProfiler gene list retrieval
3.3 years ago by Guangchuang Yu ★ 2.6k
2
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0
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3.1k
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Answer: Answer: Issues with enricher() function from clusterProfiler
3.3 years ago by Guangchuang Yu ★ 2.6k
0
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0
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13k
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Comment: Comment: ClusterProfiler A software for functional enrichment of differentially expressed
3.3 years ago by Guangchuang Yu ★ 2.6k
1
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0
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7.5k
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Answer: Answer: clusterprofiler: How to extract genes of a specific GO-term/pathway
3.3 years ago by Guangchuang Yu ★ 2.6k
2
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0
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10k
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Answer: A: How do I add circles to the tips of a phylogenetic tree that have white fill and
4.0 years ago by Guangchuang Yu ★ 2.6k
0
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1
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3.7k
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Answer: A: plotting trees in R: node labels from nexus tree files
4.0 years ago by Guangchuang Yu ★ 2.6k
2
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1
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20k
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Answer: A: showing specific GO pathways in the dotplot or cnetplot
4.1 years ago by Guangchuang Yu ★ 2.6k
1
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0
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7.2k
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Answer: A: How to use WEGO (Web Gene Ontology Annotation Plot)
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.6k
2
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3
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6.8k
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Answer: A: GeneBank accession 2 Entrez gene id
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.6k
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0
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4.1k
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Answer: A: ChIPseeker Error: Attempting to annotatePeaks
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.6k
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0
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12k
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Answer: A: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.6k
4
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0
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5.6k
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Answer: A: R ggtree adding metadata based on tree structure
5.1 years ago by Guangchuang Yu ★ 2.6k
2
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1
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7.3k
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Answer: A: clusterProfiler enrichGO gene size filter with minGSSize doesn't seem to work
5.1 years ago by Guangchuang Yu ★ 2.6k
1
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0
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4.9k
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Answer: A: How do I annotate a tree with boostrap scores and color code clades in ggtree?
5.3 years ago by Guangchuang Yu ★ 2.6k
0
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0
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3.0k
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Comment: C: R color tree ggtree
5.6 years ago by Guangchuang Yu ★ 2.6k
2
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1
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6.7k
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Answer: A: clusterProfiler: cnetplot with interactive output
5.6 years ago by Guangchuang Yu ★ 2.6k
2
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2
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4.1k
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Answer: A: ClusterProfiler fails to find GO terms
5.7 years ago by Guangchuang Yu ★ 2.6k
1
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0
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3.5k
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Answer: A: R tidytree ggtree error
5.8 years ago by Guangchuang Yu ★ 2.6k
1
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1
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23k
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Comment: C: Dotplot for filtered pathways result
5.8 years ago by Guangchuang Yu ★ 2.6k
1
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2
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3.9k
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Answer: A: Plot lines color change in plotAvgProf2 [ChIPseeker]
6.0 years ago by Guangchuang Yu ★ 2.6k
1
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1
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1.7k
views
Answer: C: Showing more terms in the result of GESA by ClusterProfiler
updated 6.1 years ago by 12k • written 6.2 years ago by ★ 2.6k
2
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0
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3.7k
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Answer: A: extract gseaResult in clusterprofiler
6.2 years ago by Guangchuang Yu ★ 2.6k
0
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0
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7.5k
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Comment: C: ClusterProfiler cannot map any gene
6.2 years ago by Guangchuang Yu ★ 2.6k
2
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1
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7.5k
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Comment: C: ClusterProfiler cannot map any gene
6.2 years ago by Guangchuang Yu ★ 2.6k
2
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0
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22k
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Answer: A: How to convert fasta file format to phylip file format
6.2 years ago by Guangchuang Yu ★ 2.6k
0
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2
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5.1k
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Answer: A: GSEA results change in clusterProfiler
6.2 years ago by Guangchuang Yu ★ 2.6k
3
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1
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32k
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Answer: A: Get All The Genes In A Pathway (E.G. Kegg)
updated 6.2 years ago by 44k • written 13.1 years ago by ★ 2.6k
23
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10
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12k
views
Tool: ggtree: phylogenetic tree visualization and annotation
ggtree phylogeny visualization
updated 17 months ago by 44k • written 8.4 years ago by ★ 2.6k
0
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2
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13k
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Comment: C: Difference between ape::root, ggtree::reroot and phytools::reroot in R
6.3 years ago by Guangchuang Yu ★ 2.6k
0
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1
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3.8k
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Comment: C: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
6.3 years ago by Guangchuang Yu ★ 2.6k
0
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1
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3.8k
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Comment: C: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
6.3 years ago by Guangchuang Yu ★ 2.6k
13
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1
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6.8k
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Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
GO clusterProfiler KEGG R GSEA
updated 17 months ago by 44k • written 8.4 years ago by ★ 2.6k
0
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1
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3.8k
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Answer: A: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
6.3 years ago by Guangchuang Yu ★ 2.6k
0
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0
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3.3k
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Answer: A: Downstream proportions are not identical in vennpie and upsetplot results
6.3 years ago by Guangchuang Yu ★ 2.6k
0
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1
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5.2k
views
Answer: A: upsetplot in clusterprofiler
6.4 years ago by Guangchuang Yu ★ 2.6k
0
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1
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3.3k
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Comment: A: Downstream proportions are not identical in vennpie and upsetplot results
6.4 years ago by Guangchuang Yu ★ 2.6k
1
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1
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3.0k
views
Answer: A: How to get the all the overlap information of a peak in ChIPseeker
6.4 years ago by Guangchuang Yu ★ 2.6k
2
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1
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6.2k
views
Answer: A: how does ggtree interprets branch support value (e.g bootstrap value) given as n
updated 6.4 years ago by 12k • written 6.4 years ago by ★ 2.6k
1
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1
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3.9k
views
Comment: C: Pathways Enrichment Analysis.
6.6 years ago by Guangchuang Yu ★ 2.6k
204 results • Page 1 of 5
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