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Comment: Comment: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
3.2 years ago by sumudu_rangika ▴ 50
2
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0
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1.3k
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Remove related samples using plink
plink ibd pihat plink2
3.2 years ago by sumudu_rangika ▴ 50
1
vote
2
replies
2.6k
views
Filter on Allele Balance using BCFTools
bcftools allele filter balance
updated 3.0 years ago by ★ 9.5k • written 3.3 years ago by ▴ 50
0
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0
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1.1k
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CNVkit - confusion with batch command results
CNVkit
3.9 years ago by sumudu_rangika ▴ 50
0
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0
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1.0k
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snpEff- HGVS annotation
snpEff HGVS
4.1 years ago by sumudu_rangika ▴ 50
0
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0
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3.2k
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Answer: A: Assistant Investigator Position In Computational & Evolutionary Genomics At Ioz,
4.6 years ago by sumudu_rangika ▴ 50
0
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1
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8.0k
views
Comment: Comment: Vcftools Runs Of Homozygosity Option
updated 2.4 years ago by 44k • written 7.0 years ago by ▴ 50
0
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0
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1.7k
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Comment: C: Error in integrating a local database in to galaxy
7.1 years ago by sumudu_rangika ▴ 50
0
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0
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1.7k
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Comment: C: Error in integrating a local database in to galaxy
7.1 years ago by sumudu_rangika ▴ 50
0
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4
replies
1.7k
views
Error in integrating a local database in to galaxy
blastdb.loc megablst galaxy
updated 7.1 years ago by ★ 1.1k • written 7.1 years ago by ▴ 50
3
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3
replies
1.4k
views
GO analysis of a gene set
Gene Ontology analysis Gene set Leishmania
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 50
0
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0
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1.8k
views
population normalized read depth
read depth
updated 7.8 years ago by 20 • written 7.9 years ago by ▴ 50
0
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0
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1.7k
views
Problem including additional annotations to vcf using snpEff
annotations gff3 snpEff
updated 7.8 years ago by 44k • written 7.8 years ago by ▴ 50
0
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2
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4.8k
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Answer: A: SNP annotation using gff3
7.9 years ago by sumudu_rangika ▴ 50
1
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0
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3.1k
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Multi-sample variant calling
SNPs indels
8.0 years ago by sumudu_rangika ▴ 50
0
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0
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3.0k
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Comment: C: Combine single sample vcfs together
8.0 years ago by sumudu_rangika ▴ 50
8
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7
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3.1k
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Need an advice on quality control of illumina reads
next-gen
updated 8.0 years ago by 20 • written 8.2 years ago by ▴ 50
2
votes
2
replies
3.0k
views
Combine single sample vcfs together
snp
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by ▴ 50
0
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0
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7.9k
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Comment: C: How does Trimmomatic work?
8.2 years ago by sumudu_rangika ▴ 50
0
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0
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3.0k
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Comment: C: BWA MEM mapping
8.2 years ago by sumudu_rangika ▴ 50
10
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7
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3.0k
views
BWA MEM mapping
alignment
8.2 years ago by sumudu_rangika ▴ 50
0
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1
reply
3.0k
views
Answer: A: BWA MEM mapping
8.2 years ago by sumudu_rangika ▴ 50
0
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0
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3.0k
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Comment: C: BWA MEM mapping
8.2 years ago by sumudu_rangika ▴ 50
0
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0
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6.9k
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Comment: C: illumina quality trimming - FASTQC
8.2 years ago by sumudu_rangika ▴ 50
0
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1
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6.9k
views
Comment: C: illumina quality trimming - FASTQC
8.2 years ago by sumudu_rangika ▴ 50
6
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9
replies
6.9k
views
illumina quality trimming - FASTQC
next-gen
updated 8.2 years ago by ▴ 870 • written 8.2 years ago by ▴ 50
0
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2
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6.9k
views
Comment: C: illumina quality trimming - FASTQC
8.2 years ago by sumudu_rangika ▴ 50
0
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0
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7.0k
views
Comment: C: NGS Fastqc explanation
8.2 years ago by sumudu_rangika ▴ 50
0
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0
replies
3.1k
views
Answer: A: Need an advice on quality control of illumina reads
8.2 years ago by sumudu_rangika ▴ 50
1
vote
2
replies
3.1k
views
Comment: A: Need an advice on quality control of illumina reads
8.2 years ago by sumudu_rangika ▴ 50
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