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Comment: Comment: random list of coordinates of different lengths
2.1 years ago by mmmmcandrew ▴ 200
3
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1
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925
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Answer: Answer: random list of coordinates of different lengths
2.1 years ago by mmmmcandrew ▴ 200
0
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0
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1.5k
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Comment: Comment: Convert per base bedgraph to Bed format
3.6 years ago by mmmmcandrew ▴ 200
1
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0
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1.6k
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Comment: Comment: exon.bed file for coverage
3.6 years ago by mmmmcandrew ▴ 200
0
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0
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1.6k
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Answer: Answer: exon.bed file for coverage
3.6 years ago by mmmmcandrew ▴ 200
2
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1
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1.5k
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Answer: Answer: Convert per base bedgraph to Bed format
3.6 years ago by mmmmcandrew ▴ 200
0
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0
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1.6k
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Comment: Comment: exon.bed file for coverage
3.6 years ago by mmmmcandrew ▴ 200
0
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0
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3.6k
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Comment: C: Comparing gene ontology for two lists of genes
4.4 years ago by mmmmcandrew ▴ 200
7
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5
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3.6k
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Comparing gene ontology for two lists of genes
GO
updated 4.4 years ago by ▴ 60 • written 4.4 years ago by ▴ 200
0
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1
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3.6k
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Comment: C: Comparing gene ontology for two lists of genes
4.4 years ago by mmmmcandrew ▴ 200
4
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9
replies
5.2k
views
Sorting heatmaps by gene expression
RNA-Seq MNase-Seq
updated 7.1 years ago by ▴ 180 • written 8.0 years ago by ▴ 200
0
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0
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1.9k
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Comment: C: Filter for regions containing large stretches of missing data
7.5 years ago by mmmmcandrew ▴ 200
4
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5
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1.9k
views
Filter for regions containing large stretches of missing data
deeptools computematrix plotheatmap missing data
updated 7.5 years ago by 36k • written 7.5 years ago by ▴ 200
2
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1
reply
1.7k
views
Making a box/density plot for G/C content at millions of genomic locations?
boxplot GC content
updated 7.5 years ago by 36k • written 7.5 years ago by ▴ 200
5
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2
replies
5.2k
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Appropriate statistical test for overlap analyses?
statistics overlap bedtools chi square
updated 7.6 years ago by 55k • written 7.6 years ago by ▴ 200
0
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0
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7.0k
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Answer: A: Table browser +/- 2Kb of TSS export
7.6 years ago by mmmmcandrew ▴ 200
3
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2
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6.0k
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Answer: Answer: how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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1.8k
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Comment: C: gene expression classification
7.6 years ago by mmmmcandrew ▴ 200
3
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0
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1.6k
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Answer: A: Depleting CTCF sites from interval file
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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4.3k
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Comment: C: Output bed file region sizes as histogram
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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4.3k
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Comment: C: Output bed file region sizes as histogram
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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4.3k
views
Comment: C: Output bed file region sizes as histogram
7.6 years ago by mmmmcandrew ▴ 200
7
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10
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4.3k
views
Output bed file region sizes as histogram
bed bedtools bedops histogram
updated 7.6 years ago by 36k • written 7.6 years ago by ▴ 200
0
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1
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4.3k
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Comment: C: Output bed file region sizes as histogram
7.6 years ago by mmmmcandrew ▴ 200
0
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1
reply
4.3k
views
Comment: C: Output bed file region sizes as histogram
7.6 years ago by mmmmcandrew ▴ 200
1
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1
reply
1.8k
views
Answer: A: gene expression classification
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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2.5k
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Comment: C: Generate bed file containing regions with no bigwig coverage
7.6 years ago by mmmmcandrew ▴ 200
3
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3
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2.5k
views
Generate bed file containing regions with no bigwig coverage
bigwig bed
updated 7.6 years ago by 164k • written 7.6 years ago by ▴ 200
0
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0
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3.3k
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Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
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0
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2.5k
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Comment: C: Generate bed file containing regions with no bigwig coverage
7.6 years ago by mmmmcandrew ▴ 200
0
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1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
1
reply
3.3k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.6 years ago by mmmmcandrew ▴ 200
0
votes
14
replies
3.3k
views
Creating coverage files containing paired-end fragments of particular sizes
BAM bigwig wig bed paired-end
7.6 years ago by mmmmcandrew ▴ 200
6
votes
2
replies
2.2k
views
Finding minima from bigwig in specific regions from bed file
bigwig bed
updated 7.7 years ago by 36k • written 7.7 years ago by ▴ 200
0
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1
reply
2.7k
views
Comment: C: Calculating nucleosome dyad densities
8.0 years ago by mmmmcandrew ▴ 200
2
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3
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2.7k
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Calculating nucleosome dyad densities
MNase-seq bigwig bam coverage dyad density
8.0 years ago by mmmmcandrew ▴ 200
3
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0
replies
3.8k
views
Answer: A: Extracting data from bigWig/BED using threshold?
8.2 years ago by mmmmcandrew ▴ 200
8
votes
6
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3.8k
views
Extracting data from bigWig/BED using threshold?
next-gen sequencing
8.2 years ago by mmmmcandrew ▴ 200
0
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2
replies
3.8k
views
Comment: C: Extracting data from bigWig/BED using threshold?
8.2 years ago by mmmmcandrew ▴ 200
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